FC920373

Overview
NameFC920373
Unique NameFC920373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 5.855e-56
Identity = 106/166 (63.86%), Postives = 124/166 (74.70%), Query Frame = 2
Query:  140 VCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            V  A  +S    GL+ YY+  I E ++ +R K  NL RL+AQRNELN RVR LKEELQ LQEPGS+VGEVVKVMGK KVL+K+  EGKY+V            P  RVALRNDSY LH ILP+K+DPLV+LMKVEKVPD+TY+M+GGLD+QIKEIKEVIELPI  P
Sbjct:   14 VVLASSSSASVNGLKNYYIAKIQEKEIVLRDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKVMGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHP 179          

HSP 2 Score: 29.261 bits (64), Expect = 5.855e-56
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  628 QHPELFESLGIAQTR 672
            +HPELFESLGIAQ +
Sbjct:  177 KHPELFESLGIAQPK 191          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.054e-55
Identity = 111/176 (63.07%), Postives = 132/176 (75.00%), Query Frame = 2
Query:  161 SKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIPNCSSLLE*LKPGCIAIW 688
            S +GEG R YY+  I ELQL V +K+ NL RL+AQRNELN++VRML+EELQLLQE GSYVGEVVK M K KVLVKVHPEGK+VV             + RVALRN+SY LH ILP+KVDPLV+LM VEKVPDSTY+M+GGLD+QIKEIKEVIELP+  P     L   +P  + ++
Sbjct:   10 STKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 185          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.680e-54
Identity = 106/172 (61.63%), Postives = 132/172 (76.74%), Query Frame = 2
Query:  173 EGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIPNCSSLLE*LKPGCIAIW 688
            +G++ YY   I EL+++V +K  +L RLEAQRNELN+RVRMLKEELQLL  PGS+V EVVK+MGKNKVLVKV+PEGK+VV            PSTR AL+++SY LH ILP+K+DPLV+LMKVEK+PDSTYDM+GGLD+QIKEIKEVIELPI  P     L   +P  + ++
Sbjct:   14 KGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLY 185          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 192.971 bits (489), Expect = 1.289e-48
Identity = 96/171 (56.14%), Postives = 123/171 (71.93%), Query Frame = 2
Query:  176 GLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIPNCSSLLE*LKPGCIAIW 688
            G++ Y+ Q I E +L++R KT N+ RLEAQRN LN +VR +K+EL+LLQEPGSYVGEV+K++   KVLVKV PEGKY+V             S RV LR+DSY+LH +L +K DPLV+LM VEKVPDSTYDM+GGL +QIKEIKEVIELP+  P     L   +P  + ++
Sbjct:   18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILY 188          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.002e-42
Identity = 88/159 (55.35%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  164 KQGEGL-RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            +  EG  + +Y   +  L++Q+ +KT  L  LE +R ELN RVR L+EE+ ++QEP S VG VV+ MGK +VLVK +P+GKY+V               RVALR+DSY +H ILP+KVDPLV+LM VEKVPDSTY MIGGLD+QIKEI+EVIELPI  P
Sbjct:   61 RMAEGFCKNFYSNKLDHLEVQIAKKTKILRVLEQKRAELNRRVRFLREEISIVQEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHP 219          

HSP 2 Score: 28.1054 bits (61), Expect = 1.002e-42
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1
Query:  628 QHPELFESLGIAQTR 672
            +HPELFE+LGIAQ +
Sbjct:  217 KHPELFENLGIAQPK 231          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.566e-17
Identity = 49/150 (32.67%), Postives = 83/150 (55.33%), Query Frame = 2
Query:  188 YYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            Y  + I +L+LQVR        LEA +  L   +  L+ E+  L++P ++ G V++V+  ++ +V+ +   ++VV            P TRVAL   +  +  ILP+  DP V   +V + P+ TY+ IGGL +Q++E++E IELP+  P
Sbjct:   18 YLKRRIRQLELQVRM-------LEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHP 160          

HSP 2 Score: 22.7126 bits (47), Expect = 3.566e-17
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  628 QHPELFESLGI 660
            +HPELFE +GI
Sbjct:  158 KHPELFEEVGI 168          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.635e-17
Identity = 49/150 (32.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  188 YYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            Y  + I +L+LQVR        LEA +  L   +  L+ E+  L++P ++ G V++V+ +++ +V+ +   ++VV            P TRVAL   +  +  ILP+  DP V   +V + P+ TY+ IGGL +Q++E++E IELP+  P
Sbjct:   21 YLKRRIRQLELQVRM-------LEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHP 163          

HSP 2 Score: 22.7126 bits (47), Expect = 4.635e-17
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  628 QHPELFESLGI 660
            +HPELFE +GI
Sbjct:  161 KHPELFEEVGI 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 57/167 (34.13%), Postives = 83/167 (49.70%), Query Frame = 2
Query:  182 RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIPNCSSLLE*LKP-GCI 679
            R   LQ   +  L+ ++    L  L  Q  EL  +    + +L+ LQ  G  VGEV+K + + K +VK     +YVV            P TRVAL   +  +   LP +VDPLV  M  E   + +Y  IGGL +QI+E++EVIELP+  P     +  + P GC+
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 57/167 (34.13%), Postives = 83/167 (49.70%), Query Frame = 2
Query:  182 RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIPNCSSLLE*LKP-GCI 679
            R   LQ   +  L+ ++    L  L  Q  EL  +    + +L+ LQ  G  VGEV+K + + K +VK     +YVV            P TRVAL   +  +   LP +VDPLV  M  E   + +Y  IGGL +QI+E++EVIELP+  P     +  + P GC+
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 57/167 (34.13%), Postives = 83/167 (49.70%), Query Frame = 2
Query:  182 RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIPNCSSLLE*LKP-GCI 679
            R   LQ   +  L+ ++    L  L  Q  EL  +    + +L+ LQ  G  VGEV+K + + K +VK     +YVV            P TRVAL   +  +   LP +VDPLV  M  E   + +Y  IGGL +QI+E++EVIELP+  P     +  + P GC+
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171          
The following BLAST results are available for this feature:
BLAST of FC920373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PRS8_NAEFO5.855e-5663.8626S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS8_MANSE7.054e-5563.0726S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_DICDI2.680e-5461.6326S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS8_YEAST1.289e-4856.1426S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_ENCCU1.002e-4255.3526S protease regulatory subunit 8 homolog OS=Encep... [more]
PSMR_PYRFU3.566e-1732.67Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_PYRHO4.635e-1732.67Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PRS10_SPETR5.838e-1734.1326S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE5.838e-1734.1326S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN5.838e-1734.1326S protease regulatory subunit S10B OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC32007E05EF RVDevelop1 Citrus clementina cDNA clone C32007E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920373 ID=FC920373; Name=FC920373; organism=Citrus clementina; type=EST; length=689bp
GGACTAAAAACAAACCAAACCCGCACGAGACTTGATCCGAAAGACAATTA
GATTCGAACAAATCGAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGGA
ATCGAAACGAAGCAGCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGC
GAAAGGAGCATCGAAACAAGGAGAGGGATTGAGGCAATACTACCTCCAAC
ACATTCACGAACTCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAAT
CGCCTCGAAGCCCAGCGTAACGAACTCAATTCTAGAGTGCGGATGCTTAA
AGAAGAATTACAGCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTG
TTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGG
AAATATGTTGTTGATATTGATAAAAGTATTGATATAACCAAGATCACTCC
GTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCC
TGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTC
CCTGATTCTACATATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGA
GATCAAGGAGGTCATTGAGCTTCCTATCAACATCCCGAATTGTTCGAGTC
TCTTGGAATAGCTCAAACCAGGGTGTATTGCTATATGGA
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