FC920373

Overview
NameFC920373
Unique NameFC920373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 57/167 (34.13%), Postives = 83/167 (49.70%), Query Frame = 2
Query:  182 RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIPNCSSLLE*LKP-GCI 679
            R   LQ   +  L+ ++    L  L  Q  EL  +    + +L+ LQ  G  VGEV+K + + K +VK     +YVV            P TRVAL   +  +   LP +VDPLV  M  E   + +Y  IGGL +QI+E++EVIELP+  P     +  + P GC+
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 44/142 (30.99%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  212 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            L  ++R+   +   +E +R  L+  V+ L+ E++  + P   +  V +V+  ++V VK      +V+            P  RVAL   ++ +  +LPS+ DP+V  M+VE+ PD +Y+ IGGL++Q++E+KE +ELP+  P
Sbjct:   33 LMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKP 174          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.720e-16
Identity = 48/150 (32.00%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  188 YYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            Y  + I +L+LQVR        LEA +  L   +  L+ E+  L++P ++ G V++V+  ++ +V+ +   ++VV            P  RVAL   +  +  +LPS  DP V   +V + P+ TY+ IGGL +Q++E++E IELP+  P
Sbjct:   21 YLKRRIRQLELQVRM-------LEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHP 163          

HSP 2 Score: 22.7126 bits (47), Expect = 1.720e-16
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  628 QHPELFESLGI 660
            +HPELFE +GI
Sbjct:  161 KHPELFEEVGI 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.912e-16
Identity = 45/149 (30.20%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  191 YLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            Y  ++  L+ ++RQ    +  LEA +  L   +  L+ E+  L++P ++ G V++V+   + +V+ +   ++VV            P  RVAL   +  +  +LPS+ DP V   +V + P  TY+ IGGL++Q++E++E IELP+  P
Sbjct:   13 YDDYVTFLKRRIRQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHP 161          

HSP 2 Score: 22.7126 bits (47), Expect = 4.912e-16
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  628 QHPELFESLGI 660
            +HPELFE +GI
Sbjct:  159 KHPELFEQVGI 169          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.382e-16
Identity = 47/159 (29.56%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  161 SKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            S++ +    Y  + I +L+LQVR        LEA +  L   +  L+ E+  L++P ++ G +++++ +++ +V+ +   ++VV            P  RVAL   +  +  +LPS+ DP V   +V + P  +Y+ IGGLD+Q++E++E IELP+  P
Sbjct:   11 SEEYDDYIMYLKKRIRQLELQVRT-------LEADKERLERELSRLRMEMSRLRQPPAFAGTLIELLDEDRAIVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHP 162          

HSP 2 Score: 22.7126 bits (47), Expect = 6.382e-16
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  628 QHPELFESLGI 660
            +HPELFE +GI
Sbjct:  160 KHPELFEKVGI 170          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 54/168 (32.14%), Postives = 88/168 (52.38%), Query Frame = 2
Query:  164 KQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRM-------LKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            K+ E L +    H  +L+++ R++      LE +R+E   L   +R        L+ +LQ +++P   VG V +++   +V+VK     K+V             P   VAL   S  +  +LPS+ D  V  M+V++ PD +YD IGGLD+QI+EI+EV+E P+  P
Sbjct:   35 KRLEELERKLRAHEEKLRIEARRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEP 202          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  170 GEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSR-------VRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            G+   QY L+ + +L+    +      RLE ++  + S        VR L+ E++ L+ P   VG V  ++   +V+VK     K+VV            P  RVAL   +  +  +LP+  DP+V   +VE+ P+ +Y+ IGGLD QI+EI+E +ELP+  P
Sbjct:    2 GDSEIQYLLEKLKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKP 164          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.078e-15
Identity = 44/149 (29.53%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  191 YLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            Y  +I  L+ ++RQ    +  LEA +  L   +  L+ E+  L++P ++ G V++V+  ++ +V+ +   ++VV            P +RVAL   +  +  +LP++ DP V   +V + P  TY  IGGL++Q+ E++E +ELP+  P
Sbjct:   13 YEDYITFLKRRIRQLELQVRTLEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHP 161          

HSP 2 Score: 22.7126 bits (47), Expect = 1.078e-15
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  628 QHPELFESLGI 660
            +HPELFE +GI
Sbjct:  159 KHPELFEKVGI 169          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  170 GEGLRQYYLQHIH-------ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            GE + QY L+ I        EL+ Q RQ       +E Q+      +R LK E++ L+ P   +G V  V+  ++V+V+     +++V            P  R  L   S  +  +LP+  D  +  M++ + P+ TY+ IGGL+ QI+EI+E +ELP+  P
Sbjct:   14 GEDIYQYLLERITNLENRNLELREQFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKP 176          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  164 KQGEGLRQYYLQHIH-------ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            ++GE L +Y L+ +        EL+ Q+RQ   +   LE Q+      VR  K E++ ++ P   +G V  ++ +N+V+V+     +++V            P  R  L   S  +  ILP+  D  +  M+V + P   Y+ IGGL++QI EI+E +ELP+  P
Sbjct:   12 QKGEDLYRYLLERVTNLEDRNTELREQLRQIEADKRYLETQKVRYEREVRKFKGEIEQMKSPPLVIGTVTDLIDENRVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKP 176          
The following BLAST results are available for this feature:
BLAST of FC920373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PRS10_BOVIN5.838e-1734.1326S protease regulatory subunit S10B OS=Bos taurus... [more]
PSMR_METTH9.958e-1730.99Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_PYRAB1.720e-1632.00Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_PYRKO4.912e-1630.20Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_THEON6.382e-1629.56Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METKA8.430e-1632.14Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_ARCFU8.430e-1631.90Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_THEGJ1.078e-1529.53Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METMJ1.101e-1530.06Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METPE1.438e-1529.70Proteasome-activating nucleotidase OS=Methanosphae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007E05EF RVDevelop1 Citrus clementina cDNA clone C32007E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920373 ID=FC920373; Name=FC920373; organism=Citrus clementina; type=EST; length=689bp
GGACTAAAAACAAACCAAACCCGCACGAGACTTGATCCGAAAGACAATTA
GATTCGAACAAATCGAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGGA
ATCGAAACGAAGCAGCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGC
GAAAGGAGCATCGAAACAAGGAGAGGGATTGAGGCAATACTACCTCCAAC
ACATTCACGAACTCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAAT
CGCCTCGAAGCCCAGCGTAACGAACTCAATTCTAGAGTGCGGATGCTTAA
AGAAGAATTACAGCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTG
TTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGG
AAATATGTTGTTGATATTGATAAAAGTATTGATATAACCAAGATCACTCC
GTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCC
TGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTC
CCTGATTCTACATATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGA
GATCAAGGAGGTCATTGAGCTTCCTATCAACATCCCGAATTGTTCGAGTC
TCTTGGAATAGCTCAAACCAGGGTGTATTGCTATATGGA
back to top