FC920373

Overview
NameFC920373
Unique NameFC920373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            EL+ Q+RQ   +   +E Q+      VR LK E + L+ P   +G VV V+  N+V+V+     +++V            P  R  L   S  +  +LPS  D  V  M++   P   Y  IGGL +QI E++E +ELP+  P
Sbjct:   59 ELREQIRQAEADKRYIETQKIRYEREVRKLKSESEQLRSPPLIIGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRP 201          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = 2
Query:  173 EGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            E  + Y LQH        R+    L  L     +L  +    +++++ LQ  G  +GEV+K +   + +VK     +YVV               RV+L   +  +  ILP +VDPLV  M +E   D ++  +GGL++QI+E++EVIELP+  P
Sbjct:    9 EKYKSYLLQH--------REWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNP 155          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 44/144 (30.56%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIPN 640
            EL+ Q+RQ   +   +E Q+      VR LK E++ L+ P   VG +  ++   +V+V+     +++V               R  L   S  +  +LPS  D  V  M++   P  TY+ IGGL++QI EI+E +ELP+  P+
Sbjct:   34 ELKEQIRQLESDKRYIETQKIRYEREVRKLKSEIEHLKTPPLIVGTITDIIDSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPD 177          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 46/158 (29.11%), Postives = 77/158 (48.73%), Query Frame = 2
Query:  185 QYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSR-------VRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            +Y L  + +L+ +  +      ++E ++  + ++       +R L  EL  L+ P   VG ++ VM   K+++K     K+VV            P  +VAL   S  +  +LP+  DP V  M+V   P+  Y  IGGL+ QI E+KE +ELP+  P
Sbjct:   25 KYLLDRVKQLEERNVRLKEEYRKIELEKKSVENKKVQYEREIRKLTSELDRLKTPPLIVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKP 182          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.199e-13
Identity = 44/145 (30.34%), Postives = 74/145 (51.03%), Query Frame = 2
Query:  203 IHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            I EL+ ++ +       LE +  +L     +L+ EL  ++ P   VG VV  +G+ KV+VK      ++V            P  RV L   +  +  +LP   D     M+V++ P+  Y+ IGGL++Q++EI+EV+ELP+  P
Sbjct:   49 IAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHP 193          

HSP 2 Score: 22.7126 bits (47), Expect = 1.199e-13
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  628 QHPELFESLGI 660
            +HPELFE +GI
Sbjct:  191 KHPELFEKVGI 201          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+  P
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKP 157          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+  P
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKP 157          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+  P
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKP 157          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+  P
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKP 157          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+  P
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKP 157          
The following BLAST results are available for this feature:
BLAST of FC920373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PSMR_METB62.076e-1432.17Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS10_SCHPO2.712e-1430.97Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PSMR_METHJ7.890e-1430.56Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_UNCMA1.030e-1329.11Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_METJA1.199e-1330.34Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_SULIY5.114e-1331.47Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN5.114e-1331.47Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM5.114e-1331.47Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL5.114e-1331.47Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK5.114e-1331.47Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionC32007E05EF RVDevelop1 Citrus clementina cDNA clone C32007E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920373 ID=FC920373; Name=FC920373; organism=Citrus clementina; type=EST; length=689bp
GGACTAAAAACAAACCAAACCCGCACGAGACTTGATCCGAAAGACAATTA
GATTCGAACAAATCGAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGGA
ATCGAAACGAAGCAGCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGC
GAAAGGAGCATCGAAACAAGGAGAGGGATTGAGGCAATACTACCTCCAAC
ACATTCACGAACTCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAAT
CGCCTCGAAGCCCAGCGTAACGAACTCAATTCTAGAGTGCGGATGCTTAA
AGAAGAATTACAGCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTG
TTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGG
AAATATGTTGTTGATATTGATAAAAGTATTGATATAACCAAGATCACTCC
GTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCC
TGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTC
CCTGATTCTACATATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGA
GATCAAGGAGGTCATTGAGCTTCCTATCAACATCCCGAATTGTTCGAGTC
TCTTGGAATAGCTCAAACCAGGGTGTATTGCTATATGGA
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