FC920373

Overview
NameFC920373
Unique NameFC920373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+  P
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKP 157          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  158 ASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            A ++   +  Y  + +H  +L+ R +T   N L A + E N      +++L+ LQ  G  +GEV++ +   +++VK     +YVV              TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+  P
Sbjct:    8 ARRRTAAVTDYRKKLLHHKELESRVRTAREN-LRAAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNP 162          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 50/176 (28.41%), Postives = 86/176 (48.86%), Query Frame = 2
Query:  110 KQPESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            ++P    PE+    K  ++     ++  L+H      Q++Q+  N+  LE   ++  +       +++ LQ  G  +GEV+K + + K +VK     +Y+V               RV L   +  +  ILP + DPLV  M   +  + T+D IGGL +QI+E++EVIELP+  P
Sbjct:   41 EEPSRVDPEQEAHNKALNQ----FKRKLLEH-RRYDDQLKQRRQNIRDLEKLYDKTEN-------DIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNP 204          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 44/139 (31.65%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  221 QVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            + R     L  L  + +E+  +    + +++ LQ  G  VGEV+K + + K +VK     +YVV              TRV+L   +  +   LP +VDPLV  M  E   + +Y  +GGL +QI+E++EV+ELP+  P
Sbjct:   35 ECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINP 173          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 40/142 (28.17%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  212 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            L+ Q  Q       LE Q+ +    +R L+ EL  ++     +G V+ V+  ++++V+     +++V            P  +VAL   +  +  ++PS  +P V  M+V +  +  YD IGGLD+QI+E++E +ELP+  P
Sbjct:   41 LEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSP 182          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = 2
Query:  182 RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            R+  LQH  EL+ +VR    NL   + + N+        +++L+ LQ  G  +GEV++ +   +++VK     +YVV              TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+  P
Sbjct:   19 RKKLLQH-KELESRVRTARENLRGAKKEFNKT-------EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNP 162          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 44/143 (30.77%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QI+E++EV+ELP+  P
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNP 157          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 42/140 (30.00%), Postives = 72/140 (51.43%), Query Frame = 2
Query:  218 LQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            L++  K  ++NR   Q  + N    +LK EL  L+ P   +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+  P
Sbjct:   35 LRLELKNKDINRENVQIKKENE---ILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNP 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 40/142 (28.17%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  212 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            L+ Q  Q       LE Q+ +    +R L+ EL  ++     +G V+ V+  ++++V+     +++V            P  +VAL   +  +  ++PS  +P V  M+V +  +  YD IGGLD+QI+E++E +ELP+  P
Sbjct:   41 LEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEP 182          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  272 ELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            +L S  +M++EE  LL      V    +++  N    K +V +   GKYVV               RV +    Y + + LP K+DP V +M VE+ PD+TY  IGG  +QI++I+EV+ELP+  P
Sbjct:  109 DLVSDKQMMQEEQPLL------VATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHP 228          
The following BLAST results are available for this feature:
BLAST of FC920373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PSMR_SULIA5.114e-1331.47Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PS10B_ARATH5.114e-1330.0026S protease regulatory subunit S10B homolog B OS=... [more]
PRS10_YEAST5.114e-1328.4126S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PRS10_CAEEL6.679e-1331.65Probable 26S protease regulatory subunit S10B OS=C... [more]
PSMR_METMA1.139e-1228.17Proteasome-activating nucleotidase OS=Methanosarci... [more]
PS10A_ARATH1.488e-1231.5826S protease regulatory subunit 10B homolog A OS=A... [more]
PSMR_SULSO2.538e-1230.77Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_METMP3.315e-1230.00Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METAC4.329e-1228.17Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS7B_ARATH9.645e-1234.9226S protease regulatory subunit 7 homolog B OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007E05EF RVDevelop1 Citrus clementina cDNA clone C32007E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920373 ID=FC920373; Name=FC920373; organism=Citrus clementina; type=EST; length=689bp
GGACTAAAAACAAACCAAACCCGCACGAGACTTGATCCGAAAGACAATTA
GATTCGAACAAATCGAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGGA
ATCGAAACGAAGCAGCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGC
GAAAGGAGCATCGAAACAAGGAGAGGGATTGAGGCAATACTACCTCCAAC
ACATTCACGAACTCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAAT
CGCCTCGAAGCCCAGCGTAACGAACTCAATTCTAGAGTGCGGATGCTTAA
AGAAGAATTACAGCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTG
TTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGG
AAATATGTTGTTGATATTGATAAAAGTATTGATATAACCAAGATCACTCC
GTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCC
TGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTC
CCTGATTCTACATATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGA
GATCAAGGAGGTCATTGAGCTTCCTATCAACATCCCGAATTGTTCGAGTC
TCTTGGAATAGCTCAAACCAGGGTGTATTGCTATATGGA
back to top