FC920373

Overview
NameFC920373
Unique NameFC920373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 43/156 (27.56%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  173 EGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXX-PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            E  ++  LQ+  +  ++ +     LN+      +L    +  ++ ++ +Q  G  +GEV++ + + + +VK     +YVV             P  RV L   +  +  ILP +VDP++  M  E     +Y  IGGL  QI+E++EV+ELP+ IP
Sbjct:    5 ETKKEQALQNYRDRLIEHKNAELRLNKAHELIKKLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIP 160          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 44/149 (29.53%), Postives = 72/149 (48.32%), Query Frame = 2
Query:  191 YLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            YL  +    L++  K  ++ R   Q  + N    +LK EL  L+ P   +G V+  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD  +  IGGL+ QI++IKEV+ELP+  P
Sbjct:   26 YLAELESKVLRLELKNKDITRENVQIKKENE---ILKRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNP 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 41/140 (29.29%), Postives = 72/140 (51.43%), Query Frame = 2
Query:  218 LQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            L++  K  +++R   Q  + N    +LK EL  L+ P   +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+  P
Sbjct:   35 LRLELKNKDISRENVQIKKENE---ILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNP 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 41/140 (29.29%), Postives = 72/140 (51.43%), Query Frame = 2
Query:  218 LQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            L++  K  +++R   Q  + N    +LK EL  L+ P   +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+  P
Sbjct:   35 LRLELKNKDISRENVQIKKENE---ILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNP 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.715e-11
Identity = 51/176 (28.98%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  110 KQPESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            K PE+AA           K    LR   L+ I +  L   +   N  RL+ Q  +        + ++  L+     VG + +++ +N  +V      +Y V            P   + + N    +  IL  +VDP+V++MKVEK P  +Y  IGGL+ QI+EIKE +ELP+  P
Sbjct:   44 KGPEAAARLPTVTPSTKCK----LRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEED----RSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHP 211          

HSP 2 Score: 21.557 bits (44), Expect = 1.715e-11
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  631 HPELFESLGI 660
            HPEL+E +GI
Sbjct:  210 HPELYEDIGI 219          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.715e-11
Identity = 51/176 (28.98%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  110 KQPESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            K PE+AA           K    LR   L+ I +  L   +   N  RL+ Q  +        + ++  L+     VG + +++ +N  +V      +Y V            P   + + N    +  IL  +VDP+V++MKVEK P  +Y  IGGL+ QI+EIKE +ELP+  P
Sbjct:   44 KGPEAAARLPTVTPSTKCK----LRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEED----RSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHP 211          

HSP 2 Score: 21.557 bits (44), Expect = 1.715e-11
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  631 HPELFESLGI 660
            HPEL+E +GI
Sbjct:  210 HPELYEDIGI 219          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 41/140 (29.29%), Postives = 71/140 (50.71%), Query Frame = 2
Query:  218 LQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            L++  K  ++ R   Q  + N    +LK EL  L+ P   +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+  P
Sbjct:   35 LRLELKNKDVTRENVQIKKENE---ILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNP 171          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 42/144 (29.17%), Postives = 68/144 (47.22%), Query Frame = 2
Query:  209 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIPN 640
            E  +++R     +  L  ++  L   +   K E+  L  P      V++V+  N+V+VK       +V            P   VAL N    +  +LP + DPLV  M+VE+ P   +  +GGL++QI+EI E + LPI  P+
Sbjct:   20 ERDVEIRILKDKVRSLTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPH 163          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 44/157 (28.03%), Postives = 74/157 (47.13%), Query Frame = 2
Query:  167 QGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            + E ++ Y L     +Q Q R K     R E +R +++            L+     VG + +++     +V  +   ++ V            P   V L + ++ +  +L    DP+V++MK+EK P  TY  +GGLDQQI+EIKE +ELP+  P
Sbjct:   67 KSERIKDYLLMEQEFIQNQERLKPQE-ERQEEERAKVDE-----------LRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHP 211          
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.753e-11
Identity = 43/153 (28.10%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  179 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637
            L+Q  L+ I +  L  ++   N +  + + +E NS+ +  ++ ++ L+     VG + +++  N  +V      ++ V                V L N +  +  ++  +VDP+VN+MKVEK P  +Y  IGGL+ Q++E+KE IELP+  P
Sbjct:   56 LKQLKLERIKDYLLMEQEFLQNYDLNQPKVDE-NSKEQADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHP 207          

HSP 2 Score: 21.557 bits (44), Expect = 3.753e-11
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  631 HPELFESLGI 660
            HPEL+E +GI
Sbjct:  206 HPELYEEIGI 215          
The following BLAST results are available for this feature:
BLAST of FC920373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PRS10_DICDI9.645e-1227.5626S protease regulatory subunit S10B OS=Dictyostel... [more]
PSMR_METVS1.645e-1129.53Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM61.645e-1129.29Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM51.645e-1129.29Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS4B_ARATH1.715e-1128.9826S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH1.715e-1128.9826S proteasome regulatory subunit 4 homolog A OS=A... [more]
PSMR_METM72.149e-1129.29Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_AERPE2.149e-1129.17Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS4_CAEEL3.665e-1128.03Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS4_DICDI3.753e-1128.1026S protease regulatory subunit 4 homolog OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionC32007E05EF RVDevelop1 Citrus clementina cDNA clone C32007E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920373 ID=FC920373; Name=FC920373; organism=Citrus clementina; type=EST; length=689bp
GGACTAAAAACAAACCAAACCCGCACGAGACTTGATCCGAAAGACAATTA
GATTCGAACAAATCGAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGGA
ATCGAAACGAAGCAGCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGC
GAAAGGAGCATCGAAACAAGGAGAGGGATTGAGGCAATACTACCTCCAAC
ACATTCACGAACTCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAAT
CGCCTCGAAGCCCAGCGTAACGAACTCAATTCTAGAGTGCGGATGCTTAA
AGAAGAATTACAGCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTG
TTAAAGTTATGGGAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGG
AAATATGTTGTTGATATTGATAAAAGTATTGATATAACCAAGATCACTCC
GTCAACAAGAGTTGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCC
TGCCAAGCAAAGTAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTC
CCTGATTCTACATATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGA
GATCAAGGAGGTCATTGAGCTTCCTATCAACATCCCGAATTGTTCGAGTC
TCTTGGAATAGCTCAAACCAGGGTGTATTGCTATATGGA
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