FC920373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11 Identity = 56/184 (30.43%), Postives = 84/184 (45.65%), Query Frame = 2 Query: 104 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637 +TK P++A+ P C K E ++ Y L ++ Q + K LE ++ E S+V L+ P S VG + +++ N +V ++ V P V L + + + +L DPLV +MKVEK P TY IGGLD QI+EIKE +ELP+ P Sbjct: 39 KTKGPDAASKLPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHP 208
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11 Identity = 56/184 (30.43%), Postives = 84/184 (45.65%), Query Frame = 2 Query: 104 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637 +TK P++A+ P C K E ++ Y L ++ Q + K LE ++ E S+V L+ P S VG + +++ N +V ++ V P V L + + + +L DPLV +MKVEK P TY IGGLD QI+EIKE +ELP+ P Sbjct: 39 KTKGPDAASKLPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHP 208
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11 Identity = 56/184 (30.43%), Postives = 84/184 (45.65%), Query Frame = 2 Query: 104 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637 +TK P++A+ P C K E ++ Y L ++ Q + K LE ++ E S+V L+ P S VG + +++ N +V ++ V P V L + + + +L DPLV +MKVEK P TY IGGLD QI+EIKE +ELP+ P Sbjct: 39 KTKGPDAASKLPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHP 208
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11 Identity = 42/158 (26.58%), Postives = 76/158 (48.10%), Query Frame = 2 Query: 191 YLQHIHELQLQVRQKTHNLNRLEAQRNE-----LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637 Y HI + + +V+ +N L + S+ ++ ++ + +E V K++ N K ++ V K+VV RV + + Y + + LP K+DP V +M VE+ PD TY+ +GG +QI++++EV+ELP+ P Sbjct: 33 YSTHIKKAEKEVKDLAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHP 190
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11 Identity = 37/110 (33.64%), Postives = 57/110 (51.82%), Query Frame = 2 Query: 320 QEPGSYVGEVVKVMGKNK----VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637 QE V K++ +K L+ V K+VV RV + + Y +HL LP+K+DP V +M+VE+ PD TY +GG QI++++EV+E P+ P Sbjct: 91 QEQPLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHP 200
BLAST of FC920373 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11 Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 2 Query: 179 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPINIP 637 L+ L+ I + + + N RL+ Q +E N R ++L+ P S VG + +++ N +V ++ V P V L + + + +L DP+V +MK+EK P TY IGGLD QI+EIKE +ELP+ P Sbjct: 59 LKLLKLERIKDYLMMEDEFIRNQERLKPQ-DEKNEEERSKVDDLR--GTPMS-VGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHP 207 The following BLAST results are available for this feature:
BLAST of FC920373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920373 ID=FC920373; Name=FC920373; organism=Citrus clementina; type=EST; length=689bpback to top |