FC920374

Overview
NameFC920374
Unique NameFC920374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:681..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP72_USTMA (Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=UMS2 PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 5.603e-51
Identity = 98/107 (91.59%), Postives = 103/107 (96.26%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR+VNHFVQEFKRKNKKD++ N RALRRLRTACERAKRTLSS AQTTIEIDSL+EGIDFY+ I
Sbjct:  189 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDLTTNARALRRLRTACERAKRTLSSAAQTTIEIDSLFEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP72_PARBA (Heat shock 70 kDa protein 2 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-2 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.057e-49
Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVSLLTIEEGIFEVK+TAGDTHLGGEDFDNR+VNHFV EFKRK+KKD+S N RALRRLRTACERAKRTLSS AQT+IEIDSLYEGIDFY+ I
Sbjct:  189 GERNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRLVNHFVNEFKRKHKKDLSSNARALRRLRTACERAKRTLSSAAQTSIEIDSLYEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_NEUCR (Heat shock 70 kDa protein OS=Neurospora crassa GN=hsps-1 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.057e-49
Identity = 95/107 (88.79%), Postives = 104/107 (97.20%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVSLLTIEEGIFEVK+TAGDTHLGGEDFDNR+VNHFVQEFKRK+KKD+S N RALRRLRTACERAKRTLSS+AQT+IEIDSL+EGIDFY+ I
Sbjct:  189 GERNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDLSTNARALRRLRTACERAKRTLSSSAQTSIEIDSLFEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 1.380e-49
Identity = 94/107 (87.85%), Postives = 103/107 (96.26%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD+R+VNHF+QEFKRKNKKDI+GN RA+RRLRTACERAKRTLSS+AQ +IEIDSL+EGIDFY+ I
Sbjct:  189 GESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 2.354e-49
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 2
Query:   11 SVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            S GE+NVLIFDLGGGTFDVSLL+IE+GIFEVKATAGDTHLGGEDFDNR+VNHF+ EFKRKNKKDI GN RALRRLRTACERAK TLSS+AQT++EIDSLYEGIDFY+ I
Sbjct:  187 SQGEQNVLIFDLGGGTFDVSLLSIEDGIFEVKATAGDTHLGGEDFDNRLVNHFINEFKRKNKKDICGNQRALRRLRTACERAKTTLSSSAQTSLEIDSLYEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP72_CANAL (Heat shock protein SSA2 OS=Candida albicans GN=SSA2 PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 3.075e-49
Identity = 96/109 (88.07%), Postives = 103/109 (94.50%), Query Frame = 2
Query:   11 SVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            S  EKNVLIFDLGGGTFDVSLL+IE+GIFEVKATAGDTHLGGEDFDNR+VN F+QEFKRKNKKDIS N RALRRLRTACERAKRTLSS+AQT+IEIDSLYEGIDFY+ I
Sbjct:  187 SEAEKNVLIFDLGGGTFDVSLLSIEDGIFEVKATAGDTHLGGEDFDNRLVNFFIQEFKRKNKKDISTNQRALRRLRTACERAKRTLSSSAQTSIEIDSLYEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP71_CANAL (Heat shock protein SSA1 OS=Candida albicans GN=SSA1 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.075e-49
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            K  S GE NVLIFDLGGGTFDVSLL I+EGIFEVKATAGDTHLGGEDFDNR+VN F+QEFKRKNKKDIS N RALRRLRTACERAKRTLSS+AQT+IEIDSLYEGIDFY+ I
Sbjct:  185 KKGSRGEHNVLIFDLGGGTFDVSLLAIDEGIFEVKATAGDTHLGGEDFDNRLVNFFIQEFKRKNKKDISTNQRALRRLRTACERAKRTLSSSAQTSIEIDSLYEGIDFYTSI 296          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=hsp70 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.075e-49
Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR+VNHFV EFKRK+KKD+S N RALRRLRTACERAKRTLSS AQT+IEIDSL+EGIDFY+ I
Sbjct:  189 GERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKHKKDLSTNARALRRLRTACERAKRTLSSAAQTSIEIDSLFEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.850e-49
Identity = 94/106 (88.68%), Postives = 101/106 (95.28%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD+R+VNHF QEFKRKNKKDI+GN RA+RRLRTACERAKRTLSS+AQ +IEIDSLYEGIDFY+ I
Sbjct:  190 ETNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLYEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.168e-48
Identity = 92/107 (85.98%), Postives = 103/107 (96.26%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+LTIE+GIFEVKATAGDTHLGGEDFDNRMVNHFV+EFKRK+KKDIS N RALRRLRTACERAKRTLSS++Q +IEIDSL+EGIDFY+ +
Sbjct:  193 GERNVLIFDLGGGTFDVSILTIEDGIFEVKATAGDTHLGGEDFDNRMVNHFVEEFKRKHKKDISQNKRALRRLRTACERAKRTLSSSSQASIEIDSLFEGIDFYTSV 299          
The following BLAST results are available for this feature:
BLAST of FC920374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP72_USTMA5.603e-5191.59Heat shock 70 kDa protein 2 OS=Ustilago maydis GN=... [more]
HSP72_PARBA1.057e-4988.79Heat shock 70 kDa protein 2 OS=Paracoccidioides br... [more]
HSP70_NEUCR1.057e-4988.79Heat shock 70 kDa protein OS=Neurospora crassa GN=... [more]
HSP72_SCHPO1.380e-4987.85Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
HSP72_PICAN2.354e-4986.24Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
HSP72_CANAL3.075e-4988.07Heat shock protein SSA2 OS=Candida albicans GN=SSA... [more]
HSP71_CANAL3.075e-4986.61Heat shock protein SSA1 OS=Candida albicans GN=SSA... [more]
HSP70_EMENI3.075e-4988.79Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
HSP71_SCHPO6.850e-4988.68Probable heat shock protein ssa1 OS=Schizosaccharo... [more]
HSP71_ORYLA1.168e-4885.98Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32007E06EF RVDevelop1 Citrus clementina cDNA clone C32007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920374 ID=FC920374; Name=FC920374; organism=Citrus clementina; type=EST; length=344bp
GAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGATCTGGGTG
GCGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAATCTTTGAA
GTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGG
ATATTAGCGGTAACCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAG
AGAGCGAAGAGGACTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGA
TTCTTTGTATGAGGGTATTGACTTCTACTCACCCATACTCGTGC
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