FC920374

Overview
NameFC920374
Unique NameFC920374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP7A_DROSI (Heat shock 70 kDa protein cognate 1 (Fragments) OS=Drosophila simulans GN=Hsc70-1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.092e-36
Identity = 73/95 (76.84%), Postives = 85/95 (89.47%), Query Frame = 2
Query:   53 GTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GTFDVS+LTIE+G FEVKATAGDTHLG EDFDNR+VNH VQEF+RK+ KD+  N RALRRLRTACERAKRTLSS+ Q +IEIDSL+EG+DFY+ +
Sbjct:  105 GTFDVSVLTIEDG-FEVKATAGDTHLGREDFDNRLVNHLVQEFQRKHGKDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSV 198          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_MIMIV (Heat shock 70 kDa protein homolog OS=Acanthamoeba polyphaga mimivirus GN=HSP70 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.481e-35
Identity = 69/102 (67.65%), Postives = 90/102 (88.24%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            E NVLIFD+GGGT DV+LL++E+G+F+V+AT+G+T LGGEDFDNR+V   V++FKRK K D++ + +ALRRLRTACERAKR LSS+ QTTIE+DSL+EGID+
Sbjct:  192 EMNVLIFDMGGGTHDVTLLSLEDGLFQVRATSGNTKLGGEDFDNRLVTWCVEDFKRKYKTDLNQSAKALRRLRTACERAKRALSSSTQTTIEVDSLFEGIDY 293          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP75_KLUMA (Heat shock protein SSB OS=Kluyveromyces marxianus GN=SSB PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.935e-35
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E++VLIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DISG+ RALRRLRTA ERAKRTLSS AQTT+E+DSL++G DF + I
Sbjct:  195 ERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKTEFKKKTGADISGDARALRRLRTAAERAKRTLSSVAQTTVEVDSLFDGEDFEATI 300          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP75_ASHGO (Heat shock protein SSB OS=Ashbya gossypii GN=SSB PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 1.935e-35
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E++VLIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DISG+ RALRRLRTA ERAKRTLSS  QTT+E+DSL+EG DF + I
Sbjct:  195 ERHVLIFDLGGGTFDVSLLNIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKAEFKKKTGLDISGDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFEGEDFETSI 300          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP75_KLULA (Heat shock protein SSB OS=Kluyveromyces lactis GN=SSB PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 2.527e-35
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E++VLIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DISG+ RALRRLRTA ERAKRTLSS AQTT+E+DSL++G DF + I
Sbjct:  195 ERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKTEFKKKTGLDISGDARALRRLRTAAERAKRTLSSVAQTTVEVDSLFDGEDFEATI 300          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.352e-35
Identity = 67/107 (62.62%), Postives = 87/107 (81.31%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GEKN+L+FDLGGGTFDVS+LTI+ G+FEV AT GDTHLGGEDFD R++ +F++  K+K+ KDIS + RAL +LR  CERAKR LSS  Q  +EI+SL++G+DF  P+
Sbjct:  223 GEKNILVFDLGGGTFDVSVLTIDNGVFEVLATNGDTHLGGEDFDQRLMEYFIKLIKKKHTKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPL 329          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.139e-34
Identity = 65/107 (60.75%), Postives = 89/107 (83.18%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GEKN+L+FDLGGGTFDVS+LTI+ G+FEV +T GDTHLGGEDFD+R++ +F++  K+K++KDIS + +AL +LR  CERAKR LSS  Q  +EI+SL++G+DF  P+
Sbjct:  222 GEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNGDTHLGGEDFDHRVMEYFIKLIKKKHQKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPL 328          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.649e-34
Identity = 69/106 (65.09%), Postives = 86/106 (81.13%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E++VLIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL++G DF S +
Sbjct:  195 ERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKAEFKKKTGLDISDDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFDGEDFESSL 300          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 3.649e-34
Identity = 69/106 (65.09%), Postives = 86/106 (81.13%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E++VLIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL++G DF S +
Sbjct:  195 ERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKAEFKKKTGLDISDDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFDGEDFESSL 300          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP75_CANGA (Heat shock protein SSB OS=Candida glabrata GN=SSB1 PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 3.649e-34
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            E++VLIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL+EG DF
Sbjct:  195 ERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKGEFKKKTGLDISNDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFEGEDF 296          
The following BLAST results are available for this feature:
BLAST of FC920374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7A_DROSI5.092e-3676.84Heat shock 70 kDa protein cognate 1 (Fragments) OS... [more]
HSP70_MIMIV1.481e-3567.65Heat shock 70 kDa protein homolog OS=Acanthamoeba ... [more]
HSP75_KLUMA1.935e-3566.98Heat shock protein SSB OS=Kluyveromyces marxianus ... [more]
HSP75_ASHGO1.935e-3566.98Heat shock protein SSB OS=Ashbya gossypii GN=SSB P... [more]
HSP75_KLULA2.527e-3566.98Heat shock protein SSB OS=Kluyveromyces lactis GN=... [more]
BIP_SPIOL7.352e-3562.62Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
BIP1_ARATH2.139e-3460.75Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
HSP76_YEAST3.649e-3465.09Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_YEAST3.649e-3465.09Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]
HSP75_CANGA3.649e-3467.65Heat shock protein SSB OS=Candida glabrata GN=SSB1... [more]

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Properties
Property NameValue
Genbank descriptionC32007E06EF RVDevelop1 Citrus clementina cDNA clone C32007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920374 ID=FC920374; Name=FC920374; organism=Citrus clementina; type=EST; length=344bp
GAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGATCTGGGTG
GCGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAATCTTTGAA
GTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGG
ATATTAGCGGTAACCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAG
AGAGCGAAGAGGACTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGA
TTCTTTGTATGAGGGTATTGACTTCTACTCACCCATACTCGTGC
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