FC920374

Overview
NameFC920374
Unique NameFC920374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.174e-32
Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S YEG DF
Sbjct:  216 GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDF 318          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.174e-32
Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S YEG DF
Sbjct:  216 GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDF 318          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.174e-32
Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S YEG DF
Sbjct:  217 GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDF 319          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.615e-32
Identity = 65/103 (63.11%), Postives = 83/103 (80.58%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKNVL+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R+++HF++ +K+K  KDI  + RA+++LR   E+AKR LS + Q  IEI+S +EG DF
Sbjct:  216 GEKNVLVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMDHFIKLYKKKKGKDIRKDNRAVQKLRREVEKAKRALSGSHQVRIEIESFFEGDDF 318          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.615e-32
Identity = 63/103 (61.17%), Postives = 83/103 (80.58%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LS+  Q+ IEI+S +EG DF
Sbjct:  217 GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRADKRAVQKLRREVEKAKRALSAQHQSRIEIESFFEGEDF 319          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.415e-32
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S +EG DF
Sbjct:  216 GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFFEGEDF 318          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 3.415e-32
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S +EG DF
Sbjct:  217 GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFFEGEDF 319          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.415e-32
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S +EG DF
Sbjct:  216 GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFFEGEDF 318          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.415e-32
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S +EG DF
Sbjct:  214 GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFFEGEDF 316          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.609e-32
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            EK+++++DLGGGTFDVSLLTI  G FEV ATAGDTHLGGEDFD R+V HF++ FK+K+  DIS N +AL +L+   E+AKRTLSS   T IEIDS  +GIDF
Sbjct:  227 EKHIIVYDLGGGTFDVSLLTIAGGAFEVLATAGDTHLGGEDFDYRVVRHFIKVFKKKHGIDISDNSKALAKLKREVEKAKRTLSSQMSTRIEIDSFVDGIDF 328          
The following BLAST results are available for this feature:
BLAST of FC920374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_PONAB1.174e-3263.1178 kDa glucose-regulated protein OS=Pongo abelii G... [more]
GRP78_HUMAN1.174e-3263.1178 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_BOVIN1.174e-3263.1178 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
HSP7C_DROME2.615e-3263.11Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_XENLA2.615e-3261.1778 kDa glucose-regulated protein OS=Xenopus laevis... [more]
GRP78_RAT3.415e-3262.1478 kDa glucose-regulated protein OS=Rattus norvegi... [more]
GRP78_MOUSE3.415e-3262.1478 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_MESAU3.415e-3262.1478 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_CHICK3.415e-3262.1478 kDa glucose-regulated protein OS=Gallus gallus ... [more]
GRP78_PICAN7.609e-3264.7178 kDa glucose-regulated protein homolog OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionC32007E06EF RVDevelop1 Citrus clementina cDNA clone C32007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920374 ID=FC920374; Name=FC920374; organism=Citrus clementina; type=EST; length=344bp
GAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGATCTGGGTG
GCGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAATCTTTGAA
GTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGG
ATATTAGCGGTAACCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAG
AGAGCGAAGAGGACTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGA
TTCTTTGTATGAGGGTATTGACTTCTACTCACCCATACTCGTGC
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