FC920374

Overview
NameFC920374
Unique NameFC920374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:681..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_MYCSJ (Chaperone protein dnaK OS=Mycobacterium sp. (strain JLS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 298
            E+ +L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+V   V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I +
Sbjct:  163 EQTILVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDERVVTWLVDKFKASSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINL 255          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_METSB (Chaperone protein dnaK OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V +   EFK++N  D+  +  AL+RL+ A E+AK  LSS  QT I +
Sbjct:  189 IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDVRLVEYLADEFKKENGIDLKKDKLALQRLKEAAEKAKIELSSATQTEINL 278          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_METBU (Chaperone protein dnaK OS=Methanococcoides burtonii (strain DSM 6242) GN=dnaK PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 298
            G+  +L++DLGGGTFDVS+L + +G+FEV +T+G+THLGG+DFD R+    V+EFK+    D+S +  AL+RL  A E+AK  LS  A T + +
Sbjct:  163 GDHKILVYDLGGGTFDVSILELGDGVFEVLSTSGNTHLGGDDFDQRITEFLVEEFKKAEGIDLSNDKAALQRLNDAAEKAKIELSGVASTNVNL 256          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_LEPBP (Chaperone protein dnaK OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 46/90 (51.11%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L + +G+FEVK+T GDTHLGG+DFDN ++   + EFK++   DISG+   ++RL+ A E+AK  LS T+ T I +
Sbjct:  190 IAVYDLGGGTFDVSILELGDGVFEVKSTNGDTHLGGDDFDNVVMQWMIDEFKKQTGIDISGDKNTVQRLKEAAEKAKIELSGTSSTQINL 279          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_LEPBA (Chaperone protein dnaK OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 46/90 (51.11%), Postives = 67/90 (74.44%), Query Frame = 2
Query:   29 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 298
            + ++DLGGGTFDVS+L + +G+FEVK+T GDTHLGG+DFDN ++   + EFK++   DISG+   ++RL+ A E+AK  LS T+ T I +
Sbjct:  190 IAVYDLGGGTFDVSILELGDGVFEVKSTNGDTHLGGDDFDNVVMQWMIDEFKKQTGIDISGDKNTVQRLKEAAEKAKIELSGTSSTQINL 279          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_LACDB (Chaperone protein dnaK OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 46/99 (46.46%), Postives = 73/99 (73.74%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG 316
            ++ VL++DLGGGTFDVS+L + +G+F+V +T GDTHLGG+DFDN++++  V  FK++N  D+S +  A++RL+ A E+AK+ LS  + T I +  +  G
Sbjct:  162 DETVLVYDLGGGTFDVSVLQLGDGVFQVLSTNGDTHLGGDDFDNKIIDWLVDGFKQENGIDLSKDKMAMQRLKDAAEKAKKDLSGVSSTHISLPFISAG 260          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_LACDA (Chaperone protein dnaK OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 46/99 (46.46%), Postives = 73/99 (73.74%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG 316
            ++ VL++DLGGGTFDVS+L + +G+F+V +T GDTHLGG+DFDN++++  V  FK++N  D+S +  A++RL+ A E+AK+ LS  + T I +  +  G
Sbjct:  162 DETVLVYDLGGGTFDVSVLQLGDGVFQVLSTNGDTHLGGDDFDNKIIDWLVDGFKQENGIDLSKDKMAMQRLKDAAEKAKKDLSGVSSTHISLPFISAG 260          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_LACAC (Chaperone protein dnaK OS=Lactobacillus acidophilus GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 46/99 (46.46%), Postives = 73/99 (73.74%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG 316
            ++ VL++DLGGGTFDVS+L + +G+F+V +T GDTHLGG+DFDNR+++  ++ FK +N  D+S +  A++RL+ A E+AK+ LS  + T I +  +  G
Sbjct:  162 DEKVLVYDLGGGTFDVSVLQLGDGVFQVLSTNGDTHLGGDDFDNRIMDWLIKNFKDENGVDLSKDKMAMQRLKDASEKAKKDLSGVSSTHISLPFISAG 260          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_DESPS (Chaperone protein dnaK OS=Desulfotalea psychrophila GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 298
            E+ + +FDLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V+    EFKR+   D+  +  AL+RL+   E+AK  LS+T +T I +
Sbjct:  186 EEKIAVFDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDMRIVHWLADEFKREQGIDLRSDKMALQRLKEEAEKAKMELSTTVETDINL 278          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: DNAK_DESAP (Chaperone protein dnaK OS=Desulforudis audaxviator (strain MP104C) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 47/93 (50.54%), Postives = 70/93 (75.27%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 298
            ++ +L+FDLGGGTFDVS+L + +G+FEVKAT+G+  LGG+DFD R+++  V EFK+++  D+S +  A++RLR A E+AK  LSS   T I +
Sbjct:  162 DQTILVFDLGGGTFDVSILELGDGVFEVKATSGNNRLGGDDFDQRIIDWIVAEFKKESGIDLSRDRMAMQRLREAAEKAKVELSSVVNTNINL 254          
The following BLAST results are available for this feature:
BLAST of FC920374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_MYCSJ7.138e-2252.69Chaperone protein dnaK OS=Mycobacterium sp. (strai... [more]
DNAK_METSB7.138e-2254.44Chaperone protein dnaK OS=Methylocella silvestris ... [more]
DNAK_METBU7.138e-2248.94Chaperone protein dnaK OS=Methanococcoides burtoni... [more]
DNAK_LEPBP7.138e-2251.11Chaperone protein dnaK OS=Leptospira biflexa serov... [more]
DNAK_LEPBA7.138e-2251.11Chaperone protein dnaK OS=Leptospira biflexa serov... [more]
DNAK_LACDB7.138e-2246.46Chaperone protein dnaK OS=Lactobacillus delbruecki... [more]
DNAK_LACDA7.138e-2246.46Chaperone protein dnaK OS=Lactobacillus delbruecki... [more]
DNAK_LACAC7.138e-2246.46Chaperone protein dnaK OS=Lactobacillus acidophilu... [more]
DNAK_DESPS7.138e-2252.69Chaperone protein dnaK OS=Desulfotalea psychrophil... [more]
DNAK_DESAP7.138e-2250.54Chaperone protein dnaK OS=Desulforudis audaxviator... [more]

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Properties
Property NameValue
Genbank descriptionC32007E06EF RVDevelop1 Citrus clementina cDNA clone C32007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920374 ID=FC920374; Name=FC920374; organism=Citrus clementina; type=EST; length=344bp
GAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGATCTGGGTG
GCGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAATCTTTGAA
GTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGG
ATATTAGCGGTAACCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAG
AGAGCGAAGAGGACTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGA
TTCTTTGTATGAGGGTATTGACTTCTACTCACCCATACTCGTGC
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