FC920374

Overview
NameFC920374
Unique NameFC920374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:681..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 3.182e-46
Identity = 87/109 (79.82%), Postives = 102/109 (93.58%), Query Frame = 2
Query:   11 SVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            +VGE+NVLIFDLGGGTFDVS+L+I++GIFEVK+TAGDTHLGGEDFDNR+V HFVQEFKRK+KKD++ N RALRRLRTACERAKRTLSS+ Q +IEIDSL+EG DFY+ I
Sbjct:  189 AVGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVTHFVQEFKRKHKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGTDFYTSI 297          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.182e-46
Identity = 85/107 (79.44%), Postives = 101/107 (94.39%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+LTI+ G+FEVKATAGDTHLGGEDFDNR+VNHF++EF+RK++KD+S N RALRRLRTACERAKRTLSS+ Q T+EIDSL+EG+DFY+ I
Sbjct:  193 GERNVLIFDLGGGTFDVSVLTIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRKHRKDLSRNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSI 299          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 3.182e-46
Identity = 85/107 (79.44%), Postives = 101/107 (94.39%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+L+I+ G+FEVKATAGDTHLGGEDFDNR+VNHF++EF+RK+ KD+SGN RALRRLRTACERAKRTLSS+ Q T+EIDSL+EG+DFY+ I
Sbjct:  193 GERNVLIFDLGGGTFDVSVLSIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRKHGKDLSGNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSI 299          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.182e-46
Identity = 88/112 (78.57%), Postives = 101/112 (90.18%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            K +  GE  VLIFDLGGGTFDVSLL+I++G+FEV ATAGDTHLGGEDFDNR+VNHFV EFKRK+KKDI GN RALRRLRTACERAKRTLSS++Q ++EIDSLY+GIDFY+ I
Sbjct:  187 KGSKSGEIKVLIFDLGGGTFDVSLLSIDDGVFEVLATAGDTHLGGEDFDNRLVNHFVDEFKRKHKKDIMGNQRALRRLRTACERAKRTLSSSSQASVEIDSLYDGIDFYTSI 298          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.156e-46
Identity = 85/107 (79.44%), Postives = 101/107 (94.39%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+L+I+ G+FEVKATAGDTHLGGEDFDNR+VNHFV+EF+RK++KD+S N RALRRLRTACERAKRTLSS+ Q T+EIDSL+EG+DFY+ I
Sbjct:  193 GERNVLIFDLGGGTFDVSVLSIDAGVFEVKATAGDTHLGGEDFDNRLVNHFVEEFRRKHRKDLSWNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSI 299          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 4.156e-46
Identity = 88/112 (78.57%), Postives = 101/112 (90.18%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            K  + GEKNVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDN MV+H  +EFKRK+KKDI+ N RA+RRLRTACERAKRTLSS+ Q +IEIDSLYEG+DFY+ I
Sbjct:  189 KGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNSMVSHLAEEFKRKHKKDIAPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSI 300          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_HYDMA (Heat shock 70 kDa protein OS=Hydra magnipapillata GN=HSP70.1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.156e-46
Identity = 86/106 (81.13%), Postives = 99/106 (93.40%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            EKNVLIFDLGGGTFDVS+L IE+GIFE+K+TAGDTHLGGEDFDNR+VNHFV EFKRK+KKDIS N RALRRLRTACERAKRTLS++ Q ++EIDSL++GIDFY+ I
Sbjct:  192 EKNVLIFDLGGGTFDVSILAIEDGIFEIKSTAGDTHLGGEDFDNRLVNHFVDEFKRKHKKDISSNKRALRRLRTACERAKRTLSASTQASVEIDSLFDGIDFYTSI 297          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.088e-46
Identity = 86/106 (81.13%), Postives = 99/106 (93.40%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E+NVLIFDLGGGTFDVS+LTIE+GIF++K+TAGDTHLGGEDFDNRMVNHF+ EFKRK+KKDIS N RA+RRL TACERAKRTLSS+ Q +IEIDSLYEG+DFY+ I
Sbjct:  192 ERNVLIFDLGGGTFDVSILTIEDGIFDLKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISDNKRAVRRLATACERAKRTLSSSTQASIEIDSLYEGVDFYTSI 297          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_BRUMA (Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.088e-46
Identity = 89/107 (83.18%), Postives = 101/107 (94.39%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLG EDFDNRMVNHFV EFKR +KKD++ NPRALRRLRTACERAKRTLSS++Q +IEIDSL+EGIDFY+ I
Sbjct:  191 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG-EDFDNRMVNHFVAEFKRNDKKDLASNPRALRRLRTACERAKRTLSSSSQASIEIDSLFEGIDFYTNI 296          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_PLEWA (Heat shock 70 kDa protein OS=Pleurodeles waltlii GN=HSP70 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.209e-45
Identity = 88/107 (82.24%), Postives = 99/107 (92.52%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE NVLIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNRMVNHF + FKRK+KKDI+ N RA+RRLRTACERAKRTLSS+ Q +IEIDSL+EGIDFY+ I
Sbjct:  193 GELNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRMVNHFHEPFKRKHKKDITKNKRAVRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSI 299          
The following BLAST results are available for this feature:
BLAST of FC920374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7D_DROME3.182e-4679.82Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP76_PIG3.182e-4679.44Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HSP76_HUMAN3.182e-4679.44Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HS7C3_DICDI3.182e-4678.57Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HSP76_SAGOE4.156e-4679.44Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN... [more]
HSP72_BOVIN4.156e-4678.57Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]
HSP70_HYDMA4.156e-4681.13Heat shock 70 kDa protein OS=Hydra magnipapillata ... [more]
HSP7C_ICTPU7.088e-4681.13Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HSP70_BRUMA7.088e-4683.18Heat shock 70 kDa protein OS=Brugia malayi GN=HSP7... [more]
HSP70_PLEWA1.209e-4582.24Heat shock 70 kDa protein OS=Pleurodeles waltlii G... [more]

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Properties
Property NameValue
Genbank descriptionC32007E06EF RVDevelop1 Citrus clementina cDNA clone C32007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920374 ID=FC920374; Name=FC920374; organism=Citrus clementina; type=EST; length=344bp
GAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGATCTGGGTG
GCGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAATCTTTGAA
GTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGG
ATATTAGCGGTAACCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAG
AGAGCGAAGAGGACTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGA
TTCTTTGTATGAGGGTATTGACTTCTACTCACCCATACTCGTGC
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