FC920374

Overview
NameFC920374
Unique NameFC920374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:681..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_ACHKL (Heat shock 70 kDa protein OS=Achlya klebsiana GN=HSP70 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.579e-45
Identity = 89/107 (83.18%), Postives = 99/107 (92.52%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR+V+HF  EFKRK++KD++ N RALRRLRTACERAKRTLSS+AQ  IEIDSL++GIDF S I
Sbjct:  193 GERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVDHFTAEFKRKHRKDMTQNQRALRRLRTACERAKRTLSSSAQAYIEIDSLFDGIDFNSTI 299          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.595e-45
Identity = 88/109 (80.73%), Postives = 98/109 (89.91%), Query Frame = 2
Query:   11 SVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            S  E+NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD+R+VN FV EFKRK KKD++ N R+LRRLRTACERAKRTLSS  QTT+EIDSL +GID+Y+ I
Sbjct:  196 SKSERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNFFVSEFKRKYKKDVTSNARSLRRLRTACERAKRTLSSGTQTTVEIDSLIDGIDYYASI 304          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 7.837e-45
Identity = 86/108 (79.63%), Postives = 100/108 (92.59%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+L+I+EG +FEVKATAGDTHLGGEDFDNR+VNHF +EFKRK+K DI GN RALRRLRTACERAKRTLSS+ + ++EID+L+EGIDFYS I
Sbjct:  191 GERNVLIFDLGGGTFDVSVLSIDEGSLFEVKATAGDTHLGGEDFDNRLVNHFAEEFKRKHKSDIKGNARALRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKI 298          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP77_HUMAN (Putative heat shock 70 kDa protein 7 OS=Homo sapiens GN=HSPA7 PE=5 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 7.837e-45
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            G++NVLIFDLGGGTFDVS+L+I+ G+FEVKATAGDTHLGGEDFDNR+VNHF++EF+RK+ KD+SGN RALRRLRTACERAKRT SS+ Q T+EIDSL+EG+DFY  I
Sbjct:  193 GKRNVLIFDLGGGTFDVSVLSIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRKHGKDLSGNKRALRRLRTACERAKRTPSSSTQATLEIDSLFEGVDFYKSI 299          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.837e-45
Identity = 88/107 (82.24%), Postives = 99/107 (92.52%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVSLL+IEEGIFEVK+TA DTHLGGEDFDNR+V+HF QEFKRK++KDI+ N RALRRLRTACERAKRTLSS+AQ  IEIDSL++GIDF S I
Sbjct:  193 GERNVLIFDLGGGTFDVSLLSIEEGIFEVKSTARDTHLGGEDFDNRLVDHFTQEFKRKHRKDITENQRALRRLRTACERAKRTLSSSAQAYIEIDSLFDGIDFNSTI 299          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.337e-44
Identity = 86/107 (80.37%), Postives = 98/107 (91.59%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMV+HFV+EF++K  KDI  N RALRRLRTACERAKRTLSS+AQT +EIDSL +G DFY+ I
Sbjct:  189 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVDHFVKEFQKKYNKDIRSNKRALRRLRTACERAKRTLSSSAQTNLEIDSLCDGTDFYTVI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP74_ANOAL (Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.080e-44
Identity = 85/108 (78.70%), Postives = 100/108 (92.59%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+LTI+EG +FEV++TAGDTHLGGEDFDNRMV HFV+EFKRK+KKD+S N RALRRLRTACERAKRTLSS+ + TIEID+L +GID+Y+ I
Sbjct:  189 GERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRMVGHFVEEFKRKHKKDLSKNARALRRLRTACERAKRTLSSSTEATIEIDALMDGIDYYTKI 296          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 8.665e-44
Identity = 85/106 (80.19%), Postives = 98/106 (92.45%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E NVLIFDLGGGTFDVSLL+I+EG+FEVKATAGDTHLGGEDFD+R+VN   +EFKRKNKKD++ N R+LRRLRTA ERAKRTLSS+AQT+IEIDSL+EGIDFY+ I
Sbjct:  190 EHNVLIFDLGGGTFDVSLLSIDEGVFEVKATAGDTHLGGEDFDSRLVNFLAEEFKRKNKKDLTTNQRSLRRLRTAAERAKRTLSSSAQTSIEIDSLFEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.665e-44
Identity = 86/107 (80.37%), Postives = 100/107 (93.46%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNK-KDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E+NVLIFDLGGGTFDVS+L+IE+GIFEVK+TAGDTHLGGEDFD+R+VNHFV+EFKRK+K KD++ N RA+RRLRTACERAKRTLSS+AQ  IEIDSL EGIDFY+ I
Sbjct:  193 ERNVLIFDLGGGTFDVSILSIEDGIFEVKSTAGDTHLGGEDFDSRLVNHFVEEFKRKHKGKDLTTNKRAVRRLRTACERAKRTLSSSAQANIEIDSLLEGIDFYTSI 299          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_AJECA (Heat shock 70 kDa protein OS=Ajellomyces capsulata GN=HSP70 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.665e-44
Identity = 90/108 (83.33%), Postives = 96/108 (88.89%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKK-DISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVSLLTIEEGIFEVK+TAGDTHLGGEDFDNR+VNHFV EFKRK KK   +   RALRR  TACERAKRTLSS AQT+IEIDSLYEGIDFY+ I
Sbjct:  189 GERNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRLVNHFVSEFKRKFKKISPAERARALRRSPTACERAKRTLSSAAQTSIEIDSLYEGIDFYTSI 296          
The following BLAST results are available for this feature:
BLAST of FC920374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_ACHKL1.579e-4583.18Heat shock 70 kDa protein OS=Achlya klebsiana GN=H... [more]
HSP70_PYRSA4.595e-4580.73Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]
HSP7B_DROME7.837e-4579.63Heat shock 70 kDa protein cognate 2 OS=Drosophila ... [more]
HSP77_HUMAN7.837e-4577.57Putative heat shock 70 kDa protein 7 OS=Homo sapie... [more]
HSP70_BRELC7.837e-4582.24Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]
HSP70_SCHMA1.337e-4480.37Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
HSP74_ANOAL5.080e-4478.70Heat shock protein 70 B2 OS=Anopheles albimanus GN... [more]
HSP74_YEAST8.665e-4480.19Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HSP70_ECHGR8.665e-4480.37Heat shock cognate 70 kDa protein OS=Echinococcus ... [more]
HSP70_AJECA8.665e-4483.33Heat shock 70 kDa protein OS=Ajellomyces capsulata... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007E06EF RVDevelop1 Citrus clementina cDNA clone C32007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920374 ID=FC920374; Name=FC920374; organism=Citrus clementina; type=EST; length=344bp
GAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGATCTGGGTG
GCGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAATCTTTGAA
GTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGG
ATATTAGCGGTAACCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAG
AGAGCGAAGAGGACTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGA
TTCTTTGTATGAGGGTATTGACTTCTACTCACCCATACTCGTGC
back to top