FC920374

Overview
NameFC920374
Unique NameFC920374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:681..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 1.132e-43
Identity = 84/106 (79.25%), Postives = 96/106 (90.57%), Query Frame = 2
Query:   20 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            E NVLIFDLGGGTFDVSLL+I+EG+FEVKATAGDTHLGGEDFDNR+VNH   EFKRK KKDIS N R+LRRLRTA ERAKR LSS++QT+IEIDSL+EG+DFY+ +
Sbjct:  190 EHNVLIFDLGGGTFDVSLLSIDEGVFEVKATAGDTHLGGEDFDNRLVNHLATEFKRKTKKDISNNQRSLRRLRTAAERAKRALSSSSQTSIEIDSLFEGMDFYTSL 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.132e-43
Identity = 86/108 (79.63%), Postives = 99/108 (91.67%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+LTI+EG +FEV+ATAGDTHLGGEDFDNRMV HFV+EFKRK KKD+S N RALRRLRTACERAKRTLSS+ + TIEID+L +GID+Y+ I
Sbjct:  189 GERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGGEDFDNRMVAHFVEEFKRKFKKDLSKNARALRRLRTACERAKRTLSSSTEATIEIDALMDGIDYYTKI 296          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP71_ANOAL (Heat shock protein 70 A1 OS=Anopheles albimanus GN=HSP70A1 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.132e-43
Identity = 86/108 (79.63%), Postives = 99/108 (91.67%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+LTI+EG +FEV+ATAGDTHLGGEDFDNRMV HFV+EFKRK KKD+S N RALRRLRTACERAKRTLSS+ + TIEID+L +GID+Y+ I
Sbjct:  189 GERNVLIFDLGGGTFDVSILTIDEGSLFEVRATAGDTHLGGEDFDNRMVAHFVEEFKRKFKKDLSKNARALRRLRTACERAKRTLSSSTEATIEIDALMDGIDYYTKI 296          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP68_DROME (Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.930e-43
Identity = 83/108 (76.85%), Postives = 98/108 (90.74%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GE+NVLIFDLGGGTFDVS+LTI+EG +FEV++TAGDTHLGGEDFDNR+VNHF +EFKRK KKD+  NPRALRRLRTA ERAKRTLSS+ + ++EID+LYEG DFYS +
Sbjct:  188 GERNVLIFDLGGGTFDVSILTIDEGSLFEVRSTAGDTHLGGEDFDNRLVNHFAEEFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEASLEIDALYEGHDFYSKV 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_PLAFA (Heat shock 70 kDa protein OS=Plasmodium falciparum PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.521e-43
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNK-KDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+LIFDLGGGTFDVSLLTIE+GIFEVKATAGDTHLGGEDFDNR+VN  V++FKRKN+ KD+S N RALRRLRT CERAKRTLSS+ Q TIEIDSL+EGID+
Sbjct:  203 GEKNILIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNFCVEDFKRKNRGKDLSKNSRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY 306          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_PLACB (Heat shock 70 kDa protein OS=Plasmodium cynomolgi (strain Berok) PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.521e-43
Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNK-KDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            GEKN+LIFDLGGGTFDVSLLTIE+GIFEVKATAGDTHLGGEDFDNR+VN  V++FKRKN+ KD+S N RALRRLRT CERAKRTLSS+ Q TIEIDSL+EGID+
Sbjct:  203 GEKNILIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNFCVEDFKRKNRGKDLSKNSRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY 306          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.335e-43
Identity = 86/110 (78.18%), Postives = 99/110 (90.00%), Query Frame = 2
Query:    8 TSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            T  GE+NVLIFDLGGGTFDVS+LTI++GIFEVKATAGDT    EDFDNR+VNHFV+EFKRK+KKDIS N RA+RRLRTACERAKRTLSS+ Q ++EIDSL+EGIDFY+ I
Sbjct:  187 TGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDT-TWVEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSI 295          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP74_TRYBB (Heat shock 70 kDa protein 4 OS=Trypanosoma brucei brucei PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 9.580e-43
Identity = 88/113 (77.88%), Postives = 97/113 (85.84%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNK-KDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            KA    E+NVLIFDLGGGTFDV+LLTI+ GIFEVKAT GDTHLGGEDFDNR+V HF +EFKRKNK KD+S N RALRRLRTACERAKRTLSS AQ TIEID+L+E IDF + I
Sbjct:  188 KADEGKERNVLIFDLGGGTFDVTLLTIDGGIFEVKATNGDTHLGGEDFDNRLVAHFTEEFKRKNKGKDLSSNLRALRRLRTACERAKRTLSSAAQATIEIDALFENIDFQATI 300          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP74_PARLI (Heat shock 70 kDa protein IV OS=Paracentrotus lividus GN=HSP70IV PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.634e-42
Identity = 83/107 (77.57%), Postives = 94/107 (87.85%), Query Frame = 2
Query:   17 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            GEK+VLIFDLGGGTFDVSLL I++G+FEV  TAGDTHLGGEDFDNR+VNH   EFKRK KKD+  NPRA+RRLRTA ERAKRTLSS+AQ  IE+DSL+EGIDFY+ I
Sbjct:  191 GEKHVLIFDLGGGTFDVSLLAIDDGVFEVLTTAGDTHLGGEDFDNRLVNHTSLEFKRKYKKDMRTNPRAIRRLRTAAERAKRTLSSSAQANIEVDSLFEGIDFYTSI 297          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.787e-42
Identity = 88/113 (77.88%), Postives = 96/113 (84.96%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTL-SSTAQTTIEIDSLYEGIDFYSPI 337
            K+++  E+NVLIFDLGGGTFDVSLLTIEEGI+EVKA   DTHLGGEDFDNR+VN FV EF   NKKDI     ALRRLRTACERAKRTL SSTAQTTIEIDSLYEG+DFY+ I
Sbjct:  190 KSSNPPEQNVLIFDLGGGTFDVSLLTIEEGIYEVKAPKSDTHLGGEDFDNRLVNRFVTEFLTNNKKDIRWECEALRRLRTACERAKRTLSSSTAQTTIEIDSLYEGVDFYTTI 302          
The following BLAST results are available for this feature:
BLAST of FC920374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP73_YEAST1.132e-4379.25Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP72_ANOAL1.132e-4379.63Heat shock protein 70 A2 OS=Anopheles albimanus GN... [more]
HSP71_ANOAL1.132e-4379.63Heat shock protein 70 A1 OS=Anopheles albimanus GN... [more]
HSP68_DROME1.930e-4376.85Heat shock protein 68 OS=Drosophila melanogaster G... [more]
HSP70_PLAFA2.521e-4382.69Heat shock 70 kDa protein OS=Plasmodium falciparum... [more]
HSP70_PLACB2.521e-4382.69Heat shock 70 kDa protein OS=Plasmodium cynomolgi ... [more]
HSP71_CERAE7.335e-4378.18Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HSP74_TRYBB9.580e-4377.88Heat shock 70 kDa protein 4 OS=Trypanosoma brucei ... [more]
HSP74_PARLI1.634e-4277.57Heat shock 70 kDa protein IV OS=Paracentrotus livi... [more]
HSP70_DAUCA2.787e-4277.88Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

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Properties
Property NameValue
Genbank descriptionC32007E06EF RVDevelop1 Citrus clementina cDNA clone C32007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920374 ID=FC920374; Name=FC920374; organism=Citrus clementina; type=EST; length=344bp
GAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGATCTGGGTG
GCGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAATCTTTGAA
GTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGG
ATATTAGCGGTAACCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAG
AGAGCGAAGAGGACTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGA
TTCTTTGTATGAGGGTATTGACTTCTACTCACCCATACTCGTGC
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