FC920375

Overview
NameFC920375
Unique NameFC920375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15452 contig Ccv1_Contig15452:2..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATA_METBF (Catalase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=kat PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.552e-48
Identity = 95/179 (53.07%), Postives = 126/179 (70.39%), Query Frame = 3
Query:  123 HNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFF 659
            +++  +TT  G PV +D +SLT G+RGPVL++D HL++KL+HF  ERIPERVVHA+GA A G+FE T D++  T A      G +T V VRFSTV  E+GS ++ RDPRGFAVKFYT +GN+DL+GN+ PVFFIRD +KFPD IH  K NP ++ ++     DF S  PES+   +  F
Sbjct:    5 NSSKVLTTGFGIPVGDDQNSLTAGNRGPVLMQDVHLLDKLSHFDHERIPERVVHAKGAGAGGYFEVTADVTKYTKAKFLSEIGKRTEVFVRFSTVGGEKGSADSARDPRGFAVKFYTEDGNYDLVGNNTPVFFIRDPLKFPDFIHTQKRNPATNCKDPDMFWDFLSLTPESIHQVTILF 183          
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATA_CAVPO (Catalase OS=Cavia porcellus GN=CAT PE=2 SV=4)

HSP 1 Score: 191.045 bits (484), Expect = 4.516e-48
Identity = 94/174 (54.02%), Postives = 124/174 (71.26%), Query Frame = 3
Query:  138 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFF 659
            +TT  G PV +  + +TVG RGP+L++D    +++AHF RERIPERVVHA+GA A  +FE THDI+    A +F   G +TP+ VRFSTV  E GS +T+RDPRGFAVKFYT EG WDL+GN+ P+FFIRDA+ FP  IH+ K NP++H+++   + DF S  PESL   S+ F
Sbjct:   27 LTTAGGNPVGDKLNIMTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFAYFEVTHDITKYCKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEEGIWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPDMMWDFWSLRPESLHQVSFLF 200          
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATA_STRCO (Catalase OS=Streptomyces coelicolor GN=katA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.006e-47
Identity = 92/172 (53.49%), Postives = 120/172 (69.77%), Query Frame = 3
Query:  138 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSW 653
            +TT +GAPV ++ +S + G  GP+L++D HL+EKLA F RERIPERVVHARG+ A G FE T D+S  T AD     G +T V +RFSTV    G  + +RDPRGFA+KFYT EGN+DL+GN+ PVFFI+D IKFPD IH+ K +P +  QE   + DF +H PE+    +W
Sbjct:    6 LTTESGAPVADNQNSASAGIGGPLLIQDQHLIEKLARFNRERIPERVVHARGSGAYGHFEVTDDVSGFTHADFLNTVGKRTEVFLRFSTVADSLGGADAVRDPRGFALKFYTEEGNYDLVGNNTPVFFIKDPIKFPDFIHSQKRDPFTGRQEPDNVFDFWAHSPEATHQITW 177          
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATE_MYCAV (Catalase HPII OS=Mycobacterium avium GN=katE PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.112e-46
Identity = 94/178 (52.81%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  135 FMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHD-ISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQE----YWRILDFCSHLPESLSTFSW 653
            ++TT  G  V + + +LTVG RGP LLED+H  EK+ HF  ERIPERVVHARGA A G+FE   D ++  T A    +PG +TPV VRFSTV   RGS +T+RD RGFA KFYT +GN+DL+GN+ PVFFI+D IKFP ++HA KP P + I +    +  + DF S  PE+L    W
Sbjct:   28 YLTTQQGVRVDHTDDALTVGERGPTLLEDFHAREKITHFDHERIPERVVHARGAGAYGYFEPYDDRLAQYTAAKFLTSPGTRTPVFVRFSTVAGSRGSADTVRDVRGFATKFYTEQGNYDLVGNNFPVFFIQDGIKFPVLVHAVKPEPHNEIPQAQSAHDTLWDFVSLQPETLHAIMW 205          
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATE_PSEAE (Catalase HPII OS=Pseudomonas aeruginosa GN=katE PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.898e-46
Identity = 95/179 (53.07%), Postives = 120/179 (67.04%), Query Frame = 3
Query:  138 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHI-------QEYWRILDFCSHLPESLSTFSW 653
            ++TN G  + ++ ++L  G RGP LLED+ + EK+ HF  ERIPERVVHARG++A G+FE   D+S LT A      G +TPV VRFSTV   RGS +T+RD RGFAVKFYT EGN+DL+GN++PVFFI+DAIKFPD +HA KP P + I         +W   DF S  PES     W
Sbjct:   42 LSTNTGTRIADNQNTLKAGERGPSLLEDFIMREKITHFDHERIPERVVHARGSAAHGYFEAYEDLSDLTKAGFLAEAGKRTPVFVRFSTVQGPRGSADTVRDVRGFAVKFYTDEGNFDLVGNNMPVFFIQDAIKFPDFVHAVKPEPHNEIPTGASAHDTFW---DFVSLTPESAHMVMW 217          
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATE_BACPF (Catalase (Fragment) OS=Bacillus pseudofirmus GN=katE PE=3 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.898e-46
Identity = 93/179 (51.96%), Postives = 116/179 (64.80%), Query Frame = 3
Query:  138 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQE-------YWRILDFCSHLPESLSTFSW 653
            +TTN G  V  D  SL  G RGP L+ED+H  EK+ HF  ERIPER+VHARG +A G F+    +   T A   + P V+TPV VRFSTV   +GS ET+RD RGFA KFYT EGN+DL+GN+IPVFFI+DAIKFPD++HA KP P + I +       +W   DF ++  ES     W
Sbjct:   27 LTTNQGLKVSEDEFSLKAGERGPTLMEDFHFREKMTHFDHERIPERIVHARGFAAHGEFQVYDSMKEFTKAKFLQDPSVKTPVFVRFSTVAGSKGSAETVRDARGFATKFYTEEGNYDLVGNNIPVFFIQDAIKFPDLVHALKPEPHNEIPQAQSAHDTFW---DFIANNQESAHMVMW 202          
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATA_DROME (Catalase OS=Drosophila melanogaster GN=Cat PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.898e-46
Identity = 93/174 (53.45%), Postives = 121/174 (69.54%), Query Frame = 3
Query:  114 STTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPES 635
            S T +   +TT  GAP+   + S TVG RGP+LL+D + +++++HF RERIPERVVHA+GA A G+FE THDI+    A +F     +TP+ VRFSTV  E GS +T RDPRGFAVKFYT +G WDL+GN+ PVFFIRD I FP  IH  K NP++H+++     DF +  PES
Sbjct:   17 SQTVSPGAITTGNGAPIGIKDASQTVGPRGPILLQDVNFLDEMSHFDRERIPERVVHAKGAGAFGYFEVTHDITQYCAAKIFDKVKKRTPLAVRFSTVGGESGSADTARDPRGFAVKFYTEDGVWDLVGNNTPVFFIRDPILFPSFIHTQKRNPQTHLKDPDMFWDFLTLRPES 190          
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATA_DICDI (Catalase-A OS=Dictyostelium discoideum GN=catA PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.237e-46
Identity = 91/179 (50.84%), Postives = 124/179 (69.27%), Query Frame = 3
Query:  126 NAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFEC-THDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFF 659
            +AP +TT++G+P+ N+ +S+T G  GP+L++D+ L++KLAHF RERIPERVVHA+GA A G+FE  + D+     A      G +TP+  RFSTV  E+GS ++ RDPRGFAVKFYT EGN+D++GN+ PVFFIRD  KFPD IH  K NP+++ ++     DF    PES    S  F
Sbjct:    2 SAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRERIPERVVHAKGAGAHGYFEVPSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSERDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFLGQTPESTHQVSILF 180          
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATA_DESVM (Catalase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=katA PE=3 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.227e-46
Identity = 90/167 (53.89%), Postives = 122/167 (73.05%), Query Frame = 3
Query:  138 MTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESL 638
            +TTNAGAPV ++ +++T G RGP+LL+D   +EKLAHF RE IPER +HA+G+ A G F  THDI+  T A LF   G +T + VRFSTV  ERG+ +  RD RGFA+KFYT +GNWDL+GN+ PVFF+RD +KFPD+ HA K +P+++++      DF + LPE+L
Sbjct:    6 LTTNAGAPVPDNQNAMTAGPRGPMLLQDVWFLEKLAHFDREVIPERRMHAKGSGAYGTFTVTHDITSYTKAALFSKIGKKTDLFVRFSTVAGERGAADAERDIRGFAIKFYTEQGNWDLVGNNTPVFFLRDPLKFPDLNHAVKRDPRTNMRSAKNNWDFWTSLPEAL 172          
BLAST of FC920375 vs. ExPASy Swiss-Prot
Match: CATA_RHIME (Catalase A OS=Rhizobium meliloti GN=katA PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 5.521e-46
Identity = 94/169 (55.62%), Postives = 121/169 (71.60%), Query Frame = 3
Query:  132 PFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESL 638
            P +TT AGAPV ++ +SLT G RG ++L+DY L+EKLAH  RERIPERVVHA+G  A G  + T DIS  T A   + PG +TP++ RFSTV  E+G+ +  RD RGFA+KFYT EGNWDL+GN+ PVFFIRD  KFPD IH  K +PK++++    + D+ S  PESL
Sbjct:    5 PTITTTAGAPVPDNQNSLTAGPRGGIMLQDYQLIEKLAHQNRERIPERVVHAKGWGAFGSLKITGDISQYTRAKCLQ-PGAETPMLARFSTVAGEQGAADHERDVRGFALKFYTDEGNWDLVGNNTPVFFIRDPYKFPDFIHTQKRHPKTNLRSATAMWDYWSLSPESL 172          
The following BLAST results are available for this feature:
BLAST of FC920375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CATA_METBF1.552e-4853.07Catalase OS=Methanosarcina barkeri (strain Fusaro ... [more]
CATA_CAVPO4.516e-4854.02Catalase OS=Cavia porcellus GN=CAT PE=2 SV=4[more]
CATA_STRCO1.006e-4753.49Catalase OS=Streptomyces coelicolor GN=katA PE=3 S... [more]
CATE_MYCAV1.112e-4652.81Catalase HPII OS=Mycobacterium avium GN=katE PE=3 ... [more]
CATE_PSEAE1.898e-4653.07Catalase HPII OS=Pseudomonas aeruginosa GN=katE PE... [more]
CATE_BACPF1.898e-4651.96Catalase (Fragment) OS=Bacillus pseudofirmus GN=ka... [more]
CATA_DROME1.898e-4653.45Catalase OS=Drosophila melanogaster GN=Cat PE=1 SV... [more]
CATA_DICDI3.237e-4650.84Catalase-A OS=Dictyostelium discoideum GN=catA PE=... [more]
CATA_DESVM4.227e-4653.89Catalase OS=Desulfovibrio vulgaris (strain Miyazak... [more]
CATA_RHIME5.521e-4655.62Catalase A OS=Rhizobium meliloti GN=katA PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32007E07EF RVDevelop1 Citrus clementina cDNA clone C32007E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920375 ID=FC920375; Name=FC920375; organism=Citrus clementina; type=EST; length=663bp
GACACTCTTCTTGAGTCTCGACTCAACTCCACTTCTCCTTTCTTACGATA
ATAATAACAGTAGCAAAATCTTCAGCAAGAAATATCGCCATGGATCCCTA
CAAATTGCTTCCGTCAACTACTCACAATGCCCCCTTTATGACTACAAATG
CCGGCGCTCCTGTCTGGAACGACAATCACTCCTTGACTGTTGGAAGTAGA
GGTCCTGTCCTTCTTGAGGATTATCATCTGGTGGAGAAACTAGCTCATTT
TGCCAGGGAGAGGATTCCAGAACGTGTCGTCCATGCTAGGGGAGCCAGTG
CTAAGGGTTTCTTTGAGTGCACCCATGATATTTCTCACCTTACTTGTGCT
GATCTTTTTCGAGCTCCAGGGGTTCAGACACCTGTCATTGTTCGCTTCTC
CACTGTTATCCATGAGCGGGGCAGCCCTGAGACACTCAGGGATCCTCGAG
GATTTGCAGTCAAGTTTTACACCAGAGAGGGTAATTGGGATCTTCTGGGT
AACAGTATCCCTGTTTTTTTCATCCGTGATGCAATCAAATTCCCAGATGT
GATCCATGCTTTTAAACCTAATCCAAAGTCTCACATCCAAGAGTACTGGA
GGATCCTCGACTTCTGCTCCCACCTTCCTGAAAGCTTGTCCACATTTTCC
TGGTTCTTTGATG
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