FC920380

Overview
NameFC920380
Unique NameFC920380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANR24_MOUSE (Ankyrin repeat domain-containing protein 24 OS=Mus musculus GN=Ankrd24 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  308 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            LH+AA  GHPE ++ LL   E++ VV+  D  GW  +H AA+ G ++  ++L S  A +N ++  G T L  AA      +  LL+ +GA  N +D  G TAL      G+    E+L++ GA++  T
Sbjct:   90 LHLAAKYGHPECLKQLL---EASCVVDIEDSSGWTALHHAAAGGCLSCSKLLCSFKAHMNPRDRSGATPLIIAAQMCHTDLCRLLLQQGAATNDQDLQGRTALMLACEGGSPETVEVLLQGGAQLSIT 214          

HSP 2 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 42/128 (32.81%), Postives = 74/128 (57.81%), Query Frame = 2
Query:  293 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 676
            + ++  H+AA  G    +E++L+  + A+V++  D  G+  +H AA  G+   ++ LL     V++++  G TALH+AA+ G L   +LL S  A +N +D+ G T L   A   ++ LC LL+++GA
Sbjct:   52 EGKSAFHLAAMRGAAGCLEVMLA--QGADVMST-DGAGYNALHLAAKYGHPECLKQLLEASCVVDIEDSSGWTALHHAAAGGCLSCSKLLCSFKAHMNPRDRSGATPLIIAAQMCHTDLCRLLLQQGA 176          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: MIB1_XENLA (E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 47/134 (35.07%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK---INSKDKVGCTALHRGASTGNSALCELLIEEGA 676
            RN   +T LH+A + GH +VV+ LL      ++    D EG  P+H A S     I+ +LL  GADV + N+ G  ALH+AA +G    + +L+S+  +   ++ K   G TALH  A   +  + ELL+ +G+
Sbjct:  526 RNKRRQTPLHIAVNKGHLQVVKKLLDFSCHPSLQ---DSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGS 656          

HSP 2 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 45/132 (34.09%), Postives = 72/132 (54.55%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            T +  A+  GH +++++LL  SVD     V A D++G   +H AA     T++E+L   GAD+N +N   +T LH A +KG L++V+ L+      + +D  G T LH   S     +  +L+E GA+V  T
Sbjct:  466 TAMQAASQNGHVDILKLLLKHSVD-----VEAEDKDGDRAVHHAAFGDEGTVIEVLQRGGADLNARNKRRQTPLHIAVNKGHLQVVKKLLDFSCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTIT 592          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: MIB1_MOUSE (E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK---INSKDKVGCTALHRGASTGNSALCELLIEEG 673
            RN   +T LH+A + GH +VV+ LL      ++    D EG  P+H A S     I+ +LL  GADV + N+ G  ALH+AA +G    + +L+S+  +   ++ K   G TALH  A   +  + ELL+ +G
Sbjct:  526 RNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQ---DSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQG 655          

HSP 2 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            T +  A+  GH +++++LL  +     V A D++G   +H AA      ++E+L    AD+N +N   +T LH A +KG L++V+ L+  G   + +D  G T LH   S     +  +L+E GA+V  T
Sbjct:  466 TAMQAASQNGHVDILKLLLKQNVD---VEAEDKDGDRAVHHAAFGDEGAVIEVLHRGSADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTIT 592          

HSP 3 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 39/112 (34.82%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  287 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 619
            N++    LH AA  G+P  + +LLS      +V+   ++G+  +H AA   +V + E+L+ +G A+++++N   +TALH A  +   +IV LL+  GAK++ +DK G T LH
Sbjct:  593 NNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQNVNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLH 704          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: MIB1_HUMAN (E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK---INSKDKVGCTALHRGASTGNSALCELLIEEG 673
            RN   +T LH+A + GH +VV+ LL      ++    D EG  P+H A S     I+ +LL  GADV + N+ G  ALH+AA +G    + +L+S+  +   ++ K   G TALH  A   +  + ELL+ +G
Sbjct:  526 RNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQ---DSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQG 655          

HSP 2 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 2
Query:  302 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 691
            T +  A+  GH +++++LL  +     V A D++G   +H AA      ++E+L    AD+N +N   +T LH A +KG L++V+ L+  G   + +D  G T LH   S     +  +L+E GA+V  T
Sbjct:  466 TAMQAASQNGHVDILKLLLKQNVD---VEAEDKDGDRAVHHAAFGDEGAVIEVLHRGSADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTIT 592          

HSP 3 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 39/112 (34.82%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  287 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALH 619
            N++    LH AA  G+P  + +LLS      +V+   ++G+  +H AA   +V + E+L+ +G A+++++N   +TALH A  +   +IV LL+  GAK++ +DK G T LH
Sbjct:  593 NNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQNVNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLH 704          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: LATA_LATTR (Alpha-latrotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 54/169 (31.95%), Postives = 82/169 (48.52%), Query Frame = 2
Query:  194 DKDLFKAAETGDSSTFXXXXXXXXXXXXXXRN--DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVE-LLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 688
            D+DL+ AA   DS+                R   D  RT+ H AA  G+ +++  L  + +S  + N  D++G+ PIH AA  GN  IV +L+ +G  +N K     +T LH AA +G++   + L+ S    IN +DK G T LH     G   L   L +   +V+A
Sbjct:  455 DRDLYNAASNPDSAVGFKEFTKLNYDGANIRATFDHGRTVFHAAAKSGNDKIMFGLTFLAKSTEL-NQPDKKGYTPIHVAADSGNAGIVNLLIQRGVSINSKTYHFLQTPLHLAAQRGFVTTFQRLMESPEININERDKDGFTPLHYAIRGGERILEAFLNQISIDVNA 622          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ESPN_RAT (Espin OS=Rattus norvegicus GN=Espn PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            + ++  T L++A   GH EV + L  V E +   +   ++G  P+H+AA +G+  ++  L+S  ADV+ + D  G TA+H+AAS+G  K++  L+  GA+I S+D  G T LH  A  G    C++L   GA +D
Sbjct:  168 QTNNGATPLYLACQEGHLEVTKYL--VQECSADPHLRAQDGMTPLHAAAQMGHNPVLVWLVSF-ADVSFEQDHDGATAMHFAASRGHTKVLSWLLLHGAEI-SQDLWGGTPLHDAAENGELECCQILAVNGAGLD 298          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: CTTB2_PAPAN (Cortactin-binding protein 2 OS=Papio anubis GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 41/125 (32.80%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  290 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 664
            +D  + L+ AA  GH + V +LLS +     +NA D+ G+ P+ +AA+ G+   VE+L++  A++N   DGG+T L+ A      + ++LL+  G   + K   G T +H    TGN    +LL+
Sbjct:  742 EDGHSALYSAAKNGHTDCVRLLLSAEAQ---INAADKNGFTPLCAAAAQGHFECVELLIAYDANINHAADGGQTPLYLACKNENKECIKLLLEAGTNRSVKTTDGWTPVHAAVDTGNVDSLKLLM 863          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: CTTB2_COLGU (Cortactin-binding protein 2 OS=Colobus guereza GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 41/125 (32.80%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  290 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 664
            +D  + L+ AA  GH + V +LLS +     +NA D+ G+ P+ +AA+ G+   VE+L++  A++N   DGG+T L+ A      + ++LL+  G   + K   G T +H    TGN    +LL+
Sbjct:  742 EDGHSALYSAAKNGHTDCVRLLLSAEAQ---INAADKNGFTPLCAAAAQGHFECVELLIAYDANINHAADGGQTPLYLACKNENKECIKLLLEAGTNRSVKTTDGWTPVHAAVDTGNVDSLKLLM 863          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: CTTB2_CERAE (Cortactin-binding protein 2 OS=Cercopithecus aethiops GN=CTTNBP2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 41/125 (32.80%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  290 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 664
            +D  + L+ AA  GH + V +LLS +     +NA D+ G+ P+ +AA+ G+   VE+L++  A++N   DGG+T L+ A      + ++LL+  G   + K   G T +H    TGN    +LL+
Sbjct:  742 EDGHSALYSAAKNGHTDCVRLLLSAEAQ---INAADKNGFTPLCAAAAQGHFECVELLIAYDANINHAADGGQTPLYLACKNENKECIKLLLEAGTNRSVKTTDGWTPVHAAVDTGNVDSLKLLM 863          
BLAST of FC920380 vs. ExPASy Swiss-Prot
Match: ANKS3_MOUSE (Ankyrin repeat and SAM domain-containing protein 3 OS=Mus musculus GN=Anks3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 45/135 (33.33%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  284 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVD 685
            +N    T L  A+  GH  +V +LL    S NV      EG  P+  A+S GN +I   LL +GA++ +K+  G TAL +  S G  ++V+ L+  GA  N ++ V G T L   A++G+  + +  +  G +VD
Sbjct:   65 KNGGGWTALMYASYIGHDTIVHLLLEAGVSVNVPTP---EGQTPLMLASSCGNESIAYFLLQQGAELEMKDIHGWTALFHCTSAGHQQMVKFLLESGANANVREPVYGYTPLMEAAASGHEIIVQYFLNHGVKVD 196          

HSP 2 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 2
Query:  308 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 685
            LH AAS G  EVV+  +   E    +N  +  GW  +  A+ IG+ TIV +LL  G  VN+    G+T L  A+S G   I   L+ +GA++  KD  G TAL    S G+  + + L+E GA  +
Sbjct:   39 LHTAASIGQHEVVKECVQRGELD--LNKKNGGGWTALMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIHGWTALFHCTSAGHQQMVKFLLESGANAN 162          
The following BLAST results are available for this feature:
BLAST of FC920380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
ANR24_MOUSE1.501e-1235.16Ankyrin repeat domain-containing protein 24 OS=Mus... [more]
MIB1_XENLA1.960e-1235.07E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis... [more]
MIB1_MOUSE1.960e-1235.34E3 ubiquitin-protein ligase MIB1 OS=Mus musculus G... [more]
MIB1_HUMAN1.960e-1235.34E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens G... [more]
LATA_LATTR1.960e-1231.95Alpha-latrotoxin-Lt1a OS=Latrodectus tredecimgutta... [more]
ESPN_RAT1.960e-1235.56Espin OS=Rattus norvegicus GN=Espn PE=1 SV=2[more]
CTTB2_PAPAN1.960e-1232.80Cortactin-binding protein 2 OS=Papio anubis GN=CTT... [more]
CTTB2_COLGU1.960e-1232.80Cortactin-binding protein 2 OS=Colobus guereza GN=... [more]
CTTB2_CERAE1.960e-1232.80Cortactin-binding protein 2 OS=Cercopithecus aethi... [more]
ANKS3_MOUSE1.960e-1233.33Ankyrin repeat and SAM domain-containing protein 3... [more]

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Properties
Property NameValue
Genbank descriptionC32007F01EF RVDevelop1 Citrus clementina cDNA clone C32007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920380 ID=FC920380; Name=FC920380; organism=Citrus clementina; type=EST; length=691bp
GGGGAAGGAGTAAAGTGACGAACCGCGCACCGGGTGAGAACCGGACACAA
CCGAACCGCACCATACCATTGCGCACCGCTTTCGACTTGCAACTAGCTCG
CCGCTGGACCAAATCACACCGTCAAAACTCTAATTCTCGGCAAATTGACA
GTACAATTCCGGTATGGACATGGACATCGATCAAACAATCAAGGACAAAG
ACCTCTTCAAAGCCGCCGAAACTGGAGATTCCTCAACATTCAAATCCCTC
TCAAAACAGCAGCTCTTAAAATCTCTCTCCTTGCGGAACGACGACGACCG
CACCCTCCTCCACGTCGCCGCCTCATGTGGTCACCCCGAGGTGGTGGAAA
TATTGTTGAGTGTTGATGAGTCGGCGAATGTAGTAAACGCTGTTGATGAA
GAAGGGTGGGCTCCGATTCATTCTGCGGCTAGCATTGGCAATGTGACAAT
CGTGGAAATGTTGTTAAGCAAAGGAGCTGATGTAAATTTGAAGAATGATG
GTGGGCGAACCGCTCTTCACTATGCTGCCAGCAAGGGATGGTTGAAGATT
GTGGAACTTCTGATCTCACGTGGTGCAAAAATTAACTCCAAGGACAAGGT
TGGTTGCACAGCATTGCACCGGGGAGCTAGTACAGGGAATTCAGCATTGT
GTGAACTCTTAATTGAAGAAGGAGCAGAGGTTGATGCTACT
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