FC920382

Overview
NameFC920382
Unique NameFC920382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.450e-51
Identity = 110/189 (58.20%), Postives = 127/189 (67.20%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTL 646
            MK NI+ P  G QK  EIDD+ ++R FFDKRI QEV G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P R++LLL +   C+                  IV PDL+VL LVIVKKGE +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V    R   TK  K  +KAPKIQRLVTP  L
Sbjct:    1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCY--RPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRL 184          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_YARLI (40S ribosomal protein S6 OS=Yarrowia lipolytica GN=RPS6 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.894e-51
Identity = 108/189 (57.14%), Postives = 132/189 (69.84%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTL 646
            MK NIA P  G QK ++I+D+ ++R F++KR+ QEV  D LG+EFKGYV KI GG DKQGFPMKQGV+ P RVRLLL + + C+                 CIVS DLSVL++VIVK+G+ D+ GLT    PR  GPKRA+ IRKLF LSKEDDVR+YV   RR  TTK+GK  +KAPKIQRL+TP  L
Sbjct:    1 MKLNIAYPAQGTQKCIDIEDEHRVRGFYEKRMGQEVEADFLGDEFKGYVLKITGGNDKQGFPMKQGVMHPTRVRLLLSKDSSCY--RSRRAGERKRKSVRGCIVSSDLSVLSVVIVKQGDADIEGLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYTKAPKIQRLITPRRL 185          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_AEDAL (40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.894e-51
Identity = 109/190 (57.37%), Postives = 131/190 (68.95%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTL 646
            MK N++ P TG QK  E+ DD KLR F+DKR+  E++ D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT   R  GPKRAS IRKL+NL+KEDDVR+YV   +R    K GKK  +KAPKIQRL+TP+ L
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPVVL 186          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_CAEEL (40S ribosomal protein S6 OS=Caenorhabditis elegans GN=rps-6 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.230e-51
Identity = 106/186 (56.99%), Postives = 132/186 (70.97%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTP 637
            M+ N A P TG QK  E+D+++KLR FF+KR+SQEV+ DALG+E+KGYV +I GG DKQGFPMKQG+LT GRVRLLL +G  C+                 CIV  ++S L+LVIVKKG+ ++ GLTD+  PR  GPKRASKIRKLFNL+K DDV KYV T+ +TF     K +  APKIQRL+TP
Sbjct:    1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSCY--RERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI--APKIQRLITP 182          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.510e-51
Identity = 108/193 (55.96%), Postives = 131/193 (67.88%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS----KAPKIQRLVTPLTL 646
            MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +     K GK+ +    KAPKIQRLVTP+ L
Sbjct:    1 MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY--RPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENAKPRYKAPKIQRLVTPVVL 189          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_CANGA (40S ribosomal protein S6 OS=Candida glabrata GN=RPS6A PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.094e-50
Identity = 106/189 (56.08%), Postives = 128/189 (67.72%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTL 646
            MK NIA P  G QK +E+DD+ ++R F+DKRI QE+ G+A+G+EFKGY FKI GG DKQGFPMKQGVL P RV+LLL +G  C+                  IV PDL+VL+LVIVKKGE +L G+TD   P+  GPKRA+ IRK F L+KEDDVR +V    R   TK  K  +KAPKIQRLVTP  L
Sbjct:    1 MKLNIAYPVNGTQKTVEVDDEHRVRVFYDKRIGQEIEGEAVGDEFKGYTFKITGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCY--RPRRSGERKRKSVRGAIVGPDLAVLSLVIVKKGEQELEGVTDATVPKRLGPKRANHIRKFFGLTKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRL 184          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.092e-50
Identity = 106/189 (56.08%), Postives = 129/189 (68.25%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTL 646
            MK NI+ P  G QK +EIDD+ ++R F+DKRI QEV G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL LVIVKKG+ ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  L
Sbjct:    1 MKLNISYPINGTQKCVEIDDEHRVRVFYDKRIGQEVDGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALVIVKKGDQEIEGVTNETVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGEKTYTKAPKIQRLVTPQRL 184          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_DEBHA (40S ribosomal protein S6 OS=Debaryomyces hansenii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.357e-49
Identity = 102/189 (53.97%), Postives = 130/189 (68.78%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTL 646
            MK NI+ P  G QK ++I+D+ KLR F++KR+ QEV GD +G+EFKGY+F+I GG DKQGFPMKQGV+ P RV+LLL +G  C+                 CIV+ DL+VL L +VK+G+ D+ GLTDT  P+  GPKRA+ IRK F L+KEDDVR++V    R    K  KK +KAPKIQRLVTP TL
Sbjct:    1 MKLNISYPANGTQKCIDIEDEHKLRVFYEKRMGQEVEGDTVGDEFKGYIFRITGGNDKQGFPMKQGVMHPTRVKLLLAKGHSCY--RPRRTGERKRKSVRGCIVAQDLAVLALSVVKQGDSDIEGLTDTTTPKRLGPKRANNIRKFFGLTKEDDVRQFV---VRREVVKGDKKYTKAPKIQRLVTPQTL 184          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_KLULA (40S ribosomal protein S6 OS=Kluyveromyces lactis GN=RPS6 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.023e-49
Identity = 104/189 (55.03%), Postives = 127/189 (67.20%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTL 646
            MK NI+ P  G QK +EIDD+ ++R F+DKRI QEV G+++G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LLL +G  C+                  IV PDL+VL L+I KKGE ++ G+T+   P+  GPKRA+ IRK F L+KEDDVR YV    R   TK  K  +KAPKIQRLVTP  L
Sbjct:    1 MKLNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGDKSYTKAPKIQRLVTPQRL 184          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 6.735e-49
Identity = 105/144 (72.92%), Postives = 110/144 (76.39%), Query Frame = 2
Query:  215 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTL 646
            KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTL
Sbjct:    1 KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTKW--KGSKAPKIQRLVTPLTL 139          
The following BLAST results are available for this feature:
BLAST of FC920382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_YEAST1.450e-5158.2040S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_YARLI1.894e-5157.1440S ribosomal protein S6 OS=Yarrowia lipolytica GN... [more]
RS6_AEDAL1.894e-5157.3740S ribosomal protein S6 OS=Aedes albopictus GN=Rp... [more]
RS6_CAEEL3.230e-5156.9940S ribosomal protein S6 OS=Caenorhabditis elegans... [more]
RS6_MANSE5.510e-5155.9640S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_CANGA2.094e-5056.0840S ribosomal protein S6 OS=Candida glabrata GN=RP... [more]
RS6_KLUMA6.092e-5056.0840S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]
RS6_DEBHA1.357e-4953.9740S ribosomal protein S6 OS=Debaryomyces hansenii ... [more]
RS6_KLULA3.023e-4955.0340S ribosomal protein S6 OS=Kluyveromyces lactis G... [more]
RS6_TOBAC6.735e-4972.9240S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]

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Properties
Property NameValue
Genbank descriptionC32007F03EF RVDevelop1 Citrus clementina cDNA clone C32007F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920382 ID=FC920382; Name=FC920382; organism=Citrus clementina; type=EST; length=646bp
GATAATAAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCA
CTGGGTTAGTCTGATAGCTGCAGAACAAAATGAAGTTCAATATTGCAAAT
CCCACCACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACT
CCGAGCATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTC
TTGGGGAGGAGTTCAAAGGTTATGTCTTTAAGATAATGGGAGGCTGTGAC
AAGCAAGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCG
TCTTCTGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAG
ATGGAGAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGAT
CTCTCAGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCC
TGGACTTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCT
CAAAGATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAG
TATGTCAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGT
TAGCAAGGCTCCTAAAATTCAGAGGCTGGTGACTCCTTTGACTTTG
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