FC920382

Overview
NameFC920382
Unique NameFC920382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:1..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.797e-49
Identity = 100/189 (52.91%), Postives = 128/189 (67.72%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTL 646
            MK NI+ P  G QK +E+DD+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  L
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRL 184          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.834e-46
Identity = 102/189 (53.97%), Postives = 121/189 (64.02%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTL 646
            MK NIA P  G QKK+ I+D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTV 186          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.839e-38
Identity = 90/188 (47.87%), Postives = 112/188 (59.57%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTP 637
            MK NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP 185          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.192e-37
Identity = 89/188 (47.34%), Postives = 111/188 (59.04%), Query Frame = 2
Query:   80 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTP 637
            M  NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITP 185          
BLAST of FC920382 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17
Identity = 58/165 (35.15%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  128 EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQ 622
            EI+   ++R  +DK+I  +  G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  E+   K V  Y R           K PKI+
Sbjct:    3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEE---KNVVGYIRNILKSECDDPKKIPKIR 161          
The following BLAST results are available for this feature:
BLAST of FC920382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_ASHGO8.797e-4952.9140S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_DICDI1.834e-4653.9740S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA1.839e-3847.8740S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN1.192e-3747.3440S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU3.986e-1735.1540S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC32007F03EF RVDevelop1 Citrus clementina cDNA clone C32007F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920382 ID=FC920382; Name=FC920382; organism=Citrus clementina; type=EST; length=646bp
GATAATAAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCA
CTGGGTTAGTCTGATAGCTGCAGAACAAAATGAAGTTCAATATTGCAAAT
CCCACCACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACT
CCGAGCATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTC
TTGGGGAGGAGTTCAAAGGTTATGTCTTTAAGATAATGGGAGGCTGTGAC
AAGCAAGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCG
TCTTCTGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAG
ATGGAGAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGAT
CTCTCAGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCC
TGGACTTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCT
CAAAGATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAG
TATGTCAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGT
TAGCAAGGCTCCTAAAATTCAGAGGCTGGTGACTCCTTTGACTTTG
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