FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GEOLS (Phosphoglycerate kinase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=pgk PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.552e-48
Identity = 95/176 (53.98%), Postives = 125/176 (71.02%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            DLKGK+VF+RVD NVP D+  NIT+D R+  AVPTIKY +  GAKV+L+SHLGRPKG    KY++ P   RLS+LLG +V  A DC G +V K++  +  G V++LENVRF+  EEKNDPEFA++L +  ++YVNDAF  +HRAHAS E + K +    AGFLM  E+ +   A+S
Sbjct:   11 DLKGKKVFIRVDFNVPQDEKGNITEDTRIAGAVPTIKYAVEQGAKVVLASHLGRPKGEKKSKYTMAPAAKRLSQLLGKKVMQAPDCFGPDVSKIIDSMKPGDVVMLENVRFYPGEEKNDPEFAQQLVNGCEIYVNDAFAVSHRAHASVEAITKLVPTIAAGFLMKNEMTFFDKAMS 186          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMJE (Phosphoglycerate kinase OS=Campylobacter jejuni GN=pgk PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.552e-48
Identity = 93/175 (53.14%), Postives = 124/175 (70.86%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            +K+ DL  K+VF+R D NVP DD LNITDD R+R+A+PTI+Y + +G  VIL+SHLGRPK ++ KYSL+P+  RL+ LL  E+ MA D IGE+ +     +  G +LLLEN+RF K E KND   AK+LAS+  +Y+NDAFG  HRAH+S E + KF   K   AGFL+ KE+D+
Sbjct:    7 IKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDF 181          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PELPD (Phosphoglycerate kinase OS=Pelobacter propionicus (strain DSM 2379) GN=pgk PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.027e-48
Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = 3
Query:  135 ADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            ADLK K+VF+RVD NVP D   NIT+D R+  A+PTI+Y +  GA+VIL+SHLGRPKG    KYS+ P   RLSELLG +VK A+DC GEEV + +  +  G VL+LENVRF+  EEKNDP+FA++LA+   +YVNDAF  +HRAHAS E + + +   VAGFLM  E+ +
Sbjct:   10 ADLKDKKVFIRVDFNVPQDSKGNITEDTRITGALPTIRYAIEQGARVILASHLGRPKGEKNEKYSMVPAAKRLSELLGRKVKQASDCFGEEVTREIDAMKSGEVLMLENVRFYPGEEKNDPKFAQQLANGCQVYVNDAFAVSHRAHASVEAITRVIPTVVAGFLMRNEMTF 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMJR (Phosphoglycerate kinase OS=Campylobacter jejuni (strain RM1221) GN=pgk PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.027e-48
Identity = 93/175 (53.14%), Postives = 124/175 (70.86%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            +K+ DL  K+VF+R D NVP DD LNITDD R+R+A+PTI+Y + +G  VIL+SHLGRPK ++ KYSL+P+  RL+ LL  E+ MA D IGE+ +     +  G +LLLEN+RF K E KND   AK+LAS+  +Y+NDAFG  HRAH+S E + KF   K   AGFL+ KE+D+
Sbjct:    7 IKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDF 181          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMJJ (Phosphoglycerate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=pgk PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.027e-48
Identity = 93/175 (53.14%), Postives = 124/175 (70.86%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            +K+ DL  K+VF+R D NVP DD LNITDD R+R+A+PTI+Y + +G  VIL+SHLGRPK ++ KYSL+P+  RL+ LL  E+ MA D IGE+ +     +  G +LLLEN+RF K E KND   AK+LAS+  +Y+NDAFG  HRAH+S E + KF   K   AGFL+ KE+D+
Sbjct:    7 IKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKVGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDF 181          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMJ8 (Phosphoglycerate kinase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=pgk PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.027e-48
Identity = 93/175 (53.14%), Postives = 124/175 (70.86%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            +K+ DL  K+VF+R D NVP DD LNITDD R+R+A+PTI+Y + +G  VIL+SHLGRPK ++ KYSL+P+  RL+ LL  E+ MA D IGE+ +     +  G +LLLEN+RF K E KND   AK+LAS+  +Y+NDAFG  HRAH+S E + KF   K   AGFL+ KE+D+
Sbjct:    7 IKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDF 181          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLONN (Phosphoglycerate kinase OS=Clostridium novyi (strain NT) GN=pgk PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.648e-48
Identity = 103/187 (55.08%), Postives = 134/187 (71.66%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            K +   +++  +KGK+V VR D NVPL D + ITD+NR+  A+PTIKYL+  GAKVIL SHLG+PKG   P+ SL P+  RLSELL  EV  A D   +GE  +K VAE+ +G V+LL+N R+ KEE KN+  F+K+LASLAD++VNDAFG+AHRAH ST GVA FL  +  G+L+ KEL +L  AV
Sbjct:    2 KLNKKTVEDIQVKGKKVLVRCDFNVPLKDGV-ITDENRLVGAMPTIKYLVNEGAKVILCSHLGKPKGEAKPELSLAPVAKRLSELLEKEVVFAADDTVVGENAKKAVAEMKDGDVVLLQNTRYRKEETKNEENFSKELASLADVFVNDAFGTAHRAHCSTVGVADFLNEAACGYLIQKELKFLGDAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACHD (Phosphoglycerate kinase OS=Bacillus halodurans GN=pgk PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.458e-48
Identity = 103/180 (57.22%), Postives = 131/180 (72.78%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ +L+GK+VF RVD NVP+ D + +TDD R+RAA+PTI+ L   GA++IL+SHLGRPKG V  +  L P+  RL ELLG  V   N   G E E+   E+ +G VLLLENVRF+  EEKNDPE AK  ASLAD+YVNDAFG+AHRAHASTEG+A  +  +VAG LM KEL+ L  A+S
Sbjct:    6 VRDVELQGKKVFCRVDFNVPMKDGV-VTDDTRIRAALPTIQLLAEKGARIILASHLGRPKGEVVEELRLDPVAARLQELLGKPVAKVNVAHGPEAEQAANELKDGDVLLLENVRFYPGEEKNDPELAKAFASLADVYVNDAFGAAHRAHASTEGIAHHV-TAVAGLLMEKELEVLGKALS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMJD (Phosphoglycerate kinase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=pgk PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.516e-48
Identity = 92/175 (52.57%), Postives = 124/175 (70.86%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            +K+ DL  K++F+R D NVP DD LNITDD R+R+A+PTI+Y + +G  VIL+SHLGRPK ++ KYSL+P+  RL+ LL  E+ MA D IGE+ +     +  G +LLLEN+RF K E KND   AK+LAS+  +Y+NDAFG  HRAH+S E + KF   K   AGFL+ KE+D+
Sbjct:    7 IKDIDLAKKKIFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVSKRLARLLDKEIIMAKDIIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDF 181          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_THELT (Phosphoglycerate kinase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=pgk PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.704e-48
Identity = 99/175 (56.57%), Postives = 123/175 (70.29%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +K+ DL  K V +RVD NVP+  +  ++DD R+ AA+PTIKY +   AKVIL SHLGRPKG   PKYSLKP+   L  + G+ V      +GEEV++ V  +  G VLLLEN RFH  EEKND E AK  A LAD++VNDAFG+AHRAHAS  G+A F+ PSVAGFLM KE+D+L
Sbjct:    6 IKDIDLSNKAVIMRVDFNVPIGKDGKVSDDTRITAALPTIKYAVEKKAKVILLSHLGRPKGSFDPKYSLKPIAEHLKNISGLNVIFVPHVVGEEVKEAVKNMKVGDVLLLENTRFHPGEEKNDQELAKAWAELADIHVNDAFGTAHRAHASNVGIANFI-PSVAGFLMEKEIDFL 179          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_GEOLS1.552e-4853.98Phosphoglycerate kinase OS=Geobacter lovleyi (stra... [more]
PGK_CAMJE1.552e-4853.14Phosphoglycerate kinase OS=Campylobacter jejuni GN... [more]
PGK_PELPD2.027e-4856.14Phosphoglycerate kinase OS=Pelobacter propionicus ... [more]
PGK_CAMJR2.027e-4853.14Phosphoglycerate kinase OS=Campylobacter jejuni (s... [more]
PGK_CAMJJ2.027e-4853.14Phosphoglycerate kinase OS=Campylobacter jejuni su... [more]
PGK_CAMJ82.027e-4853.14Phosphoglycerate kinase OS=Campylobacter jejuni su... [more]
PGK_CLONN2.648e-4855.08Phosphoglycerate kinase OS=Clostridium novyi (stra... [more]
PGK_BACHD3.458e-4857.22Phosphoglycerate kinase OS=Bacillus halodurans GN=... [more]
PGK_CAMJD4.516e-4852.57Phosphoglycerate kinase OS=Campylobacter jejuni su... [more]
PGK_THELT7.704e-4856.57Phosphoglycerate kinase OS=Thermotoga lettingae (s... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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