FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMHC (Phosphoglycerate kinase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=pgk PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.704e-48
Identity = 94/170 (55.29%), Postives = 123/170 (72.35%), Query Frame = 3
Query:  144 KGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            KG++VF+R D NVP+D+ LNITDD R+RAA+PTI+Y +  G  VIL+SHLGRPK G   K+SL+P+  RL+  +  E+K  ND IG+E  + V  + E  VLLL+N+RF K E KNDPEFA+KLAS A+ Y+NDAFG  HRAHAS E + KF   K   AGFL+ KE+++
Sbjct:   14 KGEKVFIRCDFNVPMDEFLNITDDRRIRAAIPTIRYCLDEGCSVILASHLGRPKNGYEAKFSLEPVAKRLARRMNREIKFVNDVIGKEAVEAVKNLKENEVLLLDNLRFEKGETKNDPEFAQKLASYANYYINDAFGVCHRAHASVEAITKFYDNKHKAAGFLLIKEVNF 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOBL (Phosphoglycerate kinase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=pgk PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.314e-47
Identity = 101/187 (54.01%), Postives = 136/187 (72.73%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            KKS+   ++ D+KGK+V VR D NVPL++   ITD+NR+  A+PTIKYLMG GAK+IL SH+G+PKG   K  SL P+  RLSE+L  EV  A+D   +GE  +K V ++ +G V+LL+N R+ KEE KN+  F+K+LASLAD++VNDAFG+AHRAH ST GV  +LK +  G+L+ KEL +L  AV
Sbjct:    5 KKSI---EDIDVKGKKVLVRCDFNVPLNEG-KITDENRLVGALPTIKYLMGKGAKIILCSHMGKPKGEPKKELSLLPVAKRLSEMLNKEVIFADDDNVVGENAKKAVEDMKDGDVVLLQNTRYRKEETKNEEVFSKELASLADVFVNDAFGTAHRAHCSTVGVTNYLKEAACGYLIQKELKFLGNAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BACTN (Phosphoglycerate kinase OS=Bacteroides thetaiotaomicron GN=pgk PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.314e-47
Identity = 100/199 (50.25%), Postives = 129/199 (64.82%), Query Frame = 3
Query:  117 VSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-----------------------KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKP--SVAGFLMXKEL 638
            +  + + +  GK+ FVRVD NVPLD+N NITDD R+RAA+PT+K ++  G  +I+ SHLGRPKGV  K+SLK ++  LSELLGVEV+ ANDC+GEE     A +  G VLLLEN+RF+ EEE                       ++  EF KKLAS AD YVNDAFG+AHRAHAST  +AK+      + G+LM KE+
Sbjct:    1 MQTIDKFNFAGKKAFVRVDFNVPLDENFNITDDTRMRAALPTLKKILADGGSIIIGSHLGRPKGVADKFSLKHIIKHLSELLGVEVQFANDCMGEEAAVKAAALQPGEVLLLENLRFYAEEEGKPRGLAEDATDEEKAAAKKAVKESQKEFTKKLASYADCYVNDAFGTAHRAHASTALIAKYFDTDNKMFGYLMEKEV 199          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_TRIVI (Phosphoglycerate kinase OS=Trichoderma viride GN=pgk1 PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.716e-47
Identity = 105/195 (53.85%), Postives = 129/195 (66.15%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKND---------------PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            + + D+KGKRV +RVD NVPLD+N NIT+  R+  A+PTIK+ + +GAK VIL SHLGRP G V  KYSLKP+VP+L ELLG  V  A DC+G EVE +V +   G V+LLEN+RFH EEE +                 EF K L +L D+YVNDAFG+AHRAH+S  GV   L    AGFLM KELDY   A+
Sbjct:    9 ITDVDVKGKRVLIRVDFNVPLDENKNITNPQRIAGAIPTIKHALDNGAKAVILMSHLGRPNGAVNAKYSLKPVVPKLEELLGKPVTFAPDCVGPEVEAIVNKADNGAVILLENLRFHIEEEGSSKDKEGNKTKADKAKVEEFRKGLTALGDVYVNDAFGTAHRAHSSMVGVD--LPQKAAGFLMKKELDYFAKAL 201          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_TRIRE (Phosphoglycerate kinase OS=Trichoderma reesei GN=pgk1 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.716e-47
Identity = 105/195 (53.85%), Postives = 129/195 (66.15%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-----------KND----PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            + + DLKGKRV +RVD NVPLD+N  IT++ R+  A+PTIK+ + +GAK V+L SHLGRP G V PKYSLKP+VP L  LLG  V  A DC+G EVE +V +   G V+LLEN+RFH EEE           K D     EF K L +L D+Y+NDAFG+AHRAH+S  GV   L    AGFLM KELDY   A+
Sbjct:    9 ITDVDLKGKRVLIRVDFNVPLDENKKITNNQRIVGAIPTIKHALDNGAKAVVLMSHLGRPNGAVNPKYSLKPVVPELERLLGKPVTFARDCVGPEVESIVNDADNGAVILLENLRFHIEEEGSAKDKDGNKTKADKAKVEEFRKGLTALGDIYINDAFGTAHRAHSSMVGVD--LPQKAAGFLMKKELDYFAKAL 201          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOBK (Phosphoglycerate kinase OS=Clostridium botulinum (strain Okra / Type B1) GN=pgk PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.927e-47
Identity = 100/187 (53.48%), Postives = 136/187 (72.73%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            KKS+   ++ D+KGK+V VR D NVPL++   ITD+NR+  A+PTIKYLMG GAK+IL SH+G+PKG   K  SL P+  RLSE+L  EV  A+D   +GE  ++ V ++ +G V+LL+N R+ KEE KN+  F+K+LASLAD++VNDAFG+AHRAH ST GV  +LK +  G+L+ KEL +L  AV
Sbjct:    5 KKSI---EDIDVKGKKVLVRCDFNVPLNEG-KITDENRLVGALPTIKYLMGKGAKIILCSHMGKPKGEPKKELSLLPVAKRLSEMLNKEVIFADDDNVVGENAKRAVEDMKDGDVVLLQNTRYRKEETKNEEVFSKELASLADVFVNDAFGTAHRAHCSTVGVTNYLKEAACGYLIQKELKFLGNAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_THEM4 (Phosphoglycerate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=pgk PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.823e-47
Identity = 99/175 (56.57%), Postives = 127/175 (72.57%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +++ D+K K+V +RVD NVPL D   ITDD R+  A+PTIKY + + A VIL SHLGRPKG   P++SLKP+  RLSELLG +V    +  GEEV+  +     G V+LLEN RF K E KNDPE AKK A LAD++VNDAFG+AHRAHAS  G+++++ PSVAGFLM KE+ +L
Sbjct:    6 IRDIDIKNKKVIMRVDFNVPLKDG-KITDDTRIVEALPTIKYAIENNAVVILLSHLGRPKGERKPEFSLKPVSERLSELLGKQVTFVPELYGEEVKMAIDNAKPGDVILLENTRFDKGETKNDPELAKKWADLADIHVNDAFGTAHRAHASNVGISQYI-PSVAGFLMEKEIKFL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LEPIC (Phosphoglycerate kinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=pgk PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.823e-47
Identity = 94/172 (54.65%), Postives = 129/172 (75.00%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            L+  DL GKRVF+RVD NVP++ N  +TD  R+   +PTI+ L+  GA++I++SHLGRPKG V P++SL P+V     L+  +V  +   IGE+  K+  E+  G +L++ENVRFHKEEE+NDP F+KKLA+LAD+YVNDAFG+AHRAH+STEG+A+ L P+ AG LM KE+
Sbjct:    6 LENVDLSGKRVFLRVDFNVPVE-NGKVTDKTRIEKTLPTIELLIKKGARIIIASHLGRPKGQVNPEFSLAPVVETFQSLVKSKVYFSKTVIGEDAIKLSKELKNGEILVIENVRFHKEEEENDPGFSKKLAALADIYVNDAFGAAHRAHSSTEGIARLL-PAYAGLLMHKEI 175          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DESAA (Phosphoglycerate kinase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=pgk PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.994e-47
Identity = 90/180 (50.00%), Postives = 128/180 (71.11%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ D+ GKRV +RVD+NVPLD NLNITDD R+RA +P+I Y +  GAKVI++SH+GRPKG V P+ S+ P+  R   LL  EV++A D +G EV+ MV ++ +G V++LEN+RFH+ E  ND  FAK+LASL D+Y+N+AF  AHR +AS   + +      AGFL+  EL+Y   A++
Sbjct:    4 MRDVDISGKRVLIRVDVNVPLDANLNITDDTRIRAVLPSINYALDEGAKVIIASHMGRPKGQVVPELSMAPVAKRFKRLLKKEVELAPDSVGPEVKAMVEKMKDGDVIMLENLRFHQAEIDNDDAFAKELASLCDVYINNAFAVAHRKNASVVAITRHAPVCAAGFLLQSELNYFAKAMN 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BORAP (Phosphoglycerate kinase OS=Borrelia afzelii (strain PKo) GN=pgk PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.522e-47
Identity = 100/180 (55.56%), Postives = 132/180 (73.33%), Query Frame = 3
Query:  114 SVSVLKEAD-LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTP-KYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            S+  +K+ +   GKRV VR D NVPL +  +I+DD R++AA+PTI+YL   GA+++L SHLGRP+G    KYSLKP+  RLS LL  +VKM +DCIG E+     ++ +G V+LLENVRF+ EEEKND  FAKKL+   D++V+DAFG+AHRAHAST GV+ +L PSV GFLM KE  +L
Sbjct:    2 SIKTVKDFNSFAGKRVLVRCDFNVPLKEG-SISDDTRIKAALPTIEYLKERGARIVLVSHLGRPEGKKNLKYSLKPVANRLSGLLNQDVKMFSDCIGSEIVNNTLQMKDGDVVLLENVRFYAEEEKNDKNFAKKLSENGDVFVSDAFGAAHRAHASTVGVSDYL-PSVGGFLMEKEDKFL 179          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CAMHC7.704e-4855.29Phosphoglycerate kinase OS=Campylobacter hominis (... [more]
PGK_CLOBL1.314e-4754.01Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_BACTN1.314e-4750.25Phosphoglycerate kinase OS=Bacteroides thetaiotaom... [more]
PGK_TRIVI1.716e-4753.85Phosphoglycerate kinase OS=Trichoderma viride GN=p... [more]
PGK_TRIRE1.716e-4753.85Phosphoglycerate kinase OS=Trichoderma reesei GN=p... [more]
PGK_CLOBK2.927e-4753.48Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_THEM43.823e-4756.57Phosphoglycerate kinase OS=Thermosipho melanesiens... [more]
PGK_LEPIC3.823e-4754.65Phosphoglycerate kinase OS=Leptospira interrogans ... [more]
PGK_DESAA4.994e-4750.00Phosphoglycerate kinase OS=Desulfatibacillum alken... [more]
PGK_BORAP6.522e-4755.56Phosphoglycerate kinase OS=Borrelia afzelii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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