FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LEPIN (Phosphoglycerate kinase OS=Leptospira interrogans GN=pgk PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.518e-47
Identity = 93/172 (54.07%), Postives = 129/172 (75.00%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            L+  DL GKRVF+RVD NVP++ N  +TD  R+   +PTI+ L+  GA++I++SHLGRPKG V P++SL P+V     L+  +V  +   IGE+  K+  E+  G +L++ENVRFHKEEE+NDP F+KKL++LAD+YVNDAFG+AHRAH+STEG+A+ L P+ AG LM KE+
Sbjct:    6 LENVDLSGKRVFLRVDFNVPVE-NGKVTDKTRIEKTLPTIELLIKKGARIIIASHLGRPKGQVNPEFSLAPVVETFQSLVKSKVYFSKTVIGEDAIKLSKELKNGEILVIENVRFHKEEEENDPGFSKKLSALADIYVNDAFGAAHRAHSSTEGIARLL-PAYAGLLMHKEI 175          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DESPS (Phosphoglycerate kinase OS=Desulfotalea psychrophila GN=pgk PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.518e-47
Identity = 95/174 (54.60%), Postives = 124/174 (71.26%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            L+E +L GKRV VRVD NVP+DD   ITDD R+R  +PT++Y++  G ++I+ SH+GRPKG    +YSL P+   L+ LLG +V +A DCIG EVE  VA +  G VLLL+N+RF+ EE +ND  FA KLA LAD+YVNDAF  +HRAHAS  GVA+ +    AGFL+  E+DY
Sbjct:    4 LRELELAGKRVLVRVDFNVPMDDKQRITDDIRIRMVLPTLRYVLEQGGRLIICSHMGRPKGKRVEEYSLAPIARHLAGLLGRDVGIAPDCIGAEVEAQVAALGVGEVLLLQNLRFYGEETENDAVFAGKLAGLADVYVNDAFAVSHRAHASVVGVAERVAEKCAGFLLQTEIDY 177          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOBH (Phosphoglycerate kinase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.112e-46
Identity = 100/187 (53.48%), Postives = 135/187 (72.19%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            KKS+   ++ D+KGK+V VR D NVPL++   ITD+NR+  A+PTIKYLM  GAK+IL SH+G+PKG   K  SL P+  RLSE+L  EV  A+D   +GE  +K V ++ +G V+LL+N R+ KEE KN+  F+K+LASLAD++VNDAFG+AHRAH ST GV  +LK +  G+L+ KEL +L  AV
Sbjct:    5 KKSI---EDIDVKGKKVLVRCDFNVPLNEG-KITDENRLVGALPTIKYLMEKGAKIILCSHMGKPKGEPKKELSLLPVAKRLSEMLNKEVIFADDDNVVGENAKKAVEDMKDGDVVLLQNTRYRKEETKNEEVFSKELASLADVFVNDAFGTAHRAHCSTVGVTNYLKEAACGYLIQKELKFLGNAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOB6 (Phosphoglycerate kinase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=pgk PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.112e-46
Identity = 100/187 (53.48%), Postives = 135/187 (72.19%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            KKS+   ++ D+KGK+V VR D NVPL++   ITD+NR+  A+PTIKYLM  GAK+IL SH+G+PKG   K  SL P+  RLSE+L  EV  A+D   +GE  +K V ++ +G V+LL+N R+ KEE KN+  F+K+LASLAD++VNDAFG+AHRAH ST GV  +LK +  G+L+ KEL +L  AV
Sbjct:    5 KKSI---EDIDVKGKKVLVRCDFNVPLNEG-KITDENRLVGALPTIKYLMEKGAKIILCSHMGKPKGEPKKELSLLPVAKRLSEMLNKEVIFADDDNVVGENAKKAVEDMKDGDVVLLQNTRYRKEETKNEEVFSKELASLADVFVNDAFGTAHRAHCSTVGVTNYLKEAACGYLIQKELKFLGNAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOB1 (Phosphoglycerate kinase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.112e-46
Identity = 100/187 (53.48%), Postives = 135/187 (72.19%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            KKS+   ++ D+KGK+V VR D NVPL++   ITD+NR+  A+PTIKYLM  GAK+IL SH+G+PKG   K  SL P+  RLSE+L  EV  A+D   +GE  +K V ++ +G V+LL+N R+ KEE KN+  F+K+LASLAD++VNDAFG+AHRAH ST GV  +LK +  G+L+ KEL +L  AV
Sbjct:    5 KKSI---EDIDVKGKKVLVRCDFNVPLNEG-KITDENRLVGALPTIKYLMEKGAKIILCSHMGKPKGEPKKELSLLPVAKRLSEMLNKEVIFADDDNVVGENAKKAVEDMKDGDVVLLQNTRYRKEETKNEEVFSKELASLADVFVNDAFGTAHRAHCSTVGVTNYLKEAACGYLIQKELKFLGNAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SULDN (Phosphoglycerate kinase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=pgk PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.453e-46
Identity = 94/177 (53.11%), Postives = 124/177 (70.06%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDYL 647
            +K  DL GK+VF+R D NVP+D+  NI+DD R+R+AV TI Y +     VIL+SHLGRP+G V  KYSL P+  R+  LL  EV +A+D +GE+  K  +E+  G VL+LEN+R+   E KND E +KKLAS+AD Y+NDAFG +HRAHAS EG+  F   K   AGFL+ KE+D+L
Sbjct:    6 IKNLDLAGKKVFIRCDFNVPMDEFGNISDDRRIRSAVSTINYCLDQECAVILASHLGRPEGEVVDKYSLIPIARRIQHLLRREVDLASDVVGEDALKRASELKSGQVLMLENLRYEAGETKNDKELSKKLASMADFYINDAFGVSHRAHASVEGITHFFDDKHKAAGFLLQKEIDFL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DESOH (Phosphoglycerate kinase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=pgk PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.453e-46
Identity = 96/172 (55.81%), Postives = 120/172 (69.77%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            LK  D+ GKRV VRVD NVPLDD   ITDD R+++AVPTI+YL+G GAKVI+ SHLGRPKG   P +SL P   RL ELL   V+MAN C+G +V   +A +  G VL+LEN+RFH  E  +D  FA+ LA+L D+YV+DAF  +HRA+AS + V K+      GFLM KEL
Sbjct:    4 LKTIDVAGKRVLVRVDFNVPLDDQQQITDDTRIQSAVPTIEYLVGAGAKVIVCSHLGRPKGKPDPVFSLAPTARRLGELLDRPVEMANTCVGPDVVSRIARMAPGDVLMLENLRFHPGEANDDDAFARALAALCDVYVDDAFAVSHRANASVDAVTKYAPVCAPGFLMEKEL 175          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOD6 (Phosphoglycerate kinase OS=Clostridium difficile (strain 630) GN=pgk PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.453e-46
Identity = 100/193 (51.81%), Postives = 136/193 (70.47%), Query Frame = 3
Query:   93 IKMAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            + M  KK++   ++ D+ GK+V VR D NVPL D + ITD+NR+  A+PTI+YL+  GAKVIL SHLG+PKG   P+ SL P+  RLSE+LG EV  A D   +GE  +K   ++  G V+LLEN R+ KEE KN+  F+K+LASLA+++VNDAFG+AHRAH ST G  +FL+  V G+L+ KEL +L  AV+
Sbjct:    1 MSMLNKKTI---EDIDVCGKKVLVRCDFNVPLQDGV-ITDENRLNGALPTIQYLISKGAKVILCSHLGKPKGEAKPELSLAPVAKRLSEMLGKEVVFAADDNVVGENAKKATEKMENGDVVLLENTRYRKEETKNEENFSKELASLAEIFVNDAFGTAHRAHCSTVGAGEFLQERVCGYLIQKELKFLGEAVA 189          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOBJ (Phosphoglycerate kinase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=pgk PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.453e-46
Identity = 100/187 (53.48%), Postives = 134/187 (71.66%), Query Frame = 3
Query:  108 KKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            KKS+  +   D+KGK+V VR D NVPL++   ITD+NR+  A+PTIKYLM  GAK+IL SH+G+PKG   K  SL P+  RLSE+L  EV  A+D   +GE  +K V ++ +G V+LL+N R+ KEE KN+  F+K+LASLAD++VNDAFG+AHRAH ST GV  +LK +  G+L+ KEL +L  AV
Sbjct:    5 KKSIEYI---DVKGKKVLVRCDFNVPLNEG-KITDENRLVGALPTIKYLMEKGAKIILCSHMGKPKGEPKKELSLLPVAKRLSEMLNKEVIFADDDNVVGENAKKAVEDMKDGDVVLLQNTRYRKEETKNEEVFSKELASLADVFVNDAFGTAHRAHCSTVGVTNYLKEAACGYLIQKELKFLGNAV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_NITSB (Phosphoglycerate kinase OS=Nitratiruptor sp. (strain SB155-2) GN=pgk PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.478e-46
Identity = 92/181 (50.83%), Postives = 122/181 (67.40%), Query Frame = 3
Query:  114 SVSVLKEADLK-GKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKP--SVAGFLMXKELDYL 647
            ++  +K+ DLK G  VF+R D NVPLD+  NITDD R+R A+PTI+Y + +  K++L SHLGRPKG   KYSLKP+  RL  LL  ++ MA D +GE+ +    ++  G +LLLEN+RF   E KND EFAKKL+   + YVNDAFG +HRAHAS E + +F       AGFL+ KE+ YL
Sbjct:    2 NIKSIKDLDLKPGNSVFIRCDFNVPLDEYGNITDDRRIREALPTIRYCLDNDCKIVLGSHLGRPKGFDEKYSLKPVAKRLHTLLKQDIIMAQDVVGEDAKAKFTKLQPGEILLLENLRFEPGETKNDEEFAKKLSQFGEFYVNDAFGVSHRAHASVEAITRFYDQDHKAAGFLLLKEIKYL 182          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_LEPIN8.518e-4754.07Phosphoglycerate kinase OS=Leptospira interrogans ... [more]
PGK_DESPS8.518e-4754.60Phosphoglycerate kinase OS=Desulfotalea psychrophi... [more]
PGK_CLOBH1.112e-4653.48Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOB61.112e-4653.48Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOB11.112e-4653.48Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_SULDN1.453e-4653.11Phosphoglycerate kinase OS=Sulfurimonas denitrific... [more]
PGK_DESOH1.453e-4655.81Phosphoglycerate kinase OS=Desulfococcus oleovoran... [more]
PGK_CLOD61.453e-4651.81Phosphoglycerate kinase OS=Clostridium difficile (... [more]
PGK_CLOBJ1.453e-4653.48Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_NITSB2.478e-4650.83Phosphoglycerate kinase OS=Nitratiruptor sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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