FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SYNFM (Phosphoglycerate kinase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=pgk PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.740e-45
Identity = 89/172 (51.74%), Postives = 119/172 (69.19%), Query Frame = 3
Query:  132 EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDY 644
            E +L GKRVF+RVD NVPLD    + DD R+RA +PT+  ++  G K IL+SHLGRPKG  + ++SLKP+   LS L+   V +A DC G EV + +A++  G VLLLEN+RFH EEEKND  F++ LA LAD+YVNDAF  +HRAHAS  G+ +F +   AG+ +  E+ Y
Sbjct:    6 ELELSGKRVFIRVDFNVPLDKEFRVKDDLRIRAVLPTLNKVIEKGGKAILASHLGRPKGKPSAEFSLKPVGEHLSRLIDRPVPLAPDCTGREVVERIAQMKNGDVLLLENLRFHAEEEKNDEAFSRALADLADVYVNDAFAVSHRAHASVHGMTRFARECAAGYQLENEIKY 177          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DESAD (Phosphoglycerate kinase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=pgk PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.740e-45
Identity = 97/179 (54.19%), Postives = 122/179 (68.16%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPE----FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            + + D+ GK++ +RVD NVPLD    ITDDNR++AAVPT KY +  GA VI+ +HLG+PKG      SL P   RL E LG+EV +A DCIG EVEKM AE+  G V++LEN+RFH EE+   PE    F K+LA+LAD+YVNDAFG AHRA+AS   V    K   AGFL+  E +YL
Sbjct:    4 IDQLDIAGKKLLMRVDFNVPLDGE-TITDDNRIKAAVPTFKYALEKGASVIVMAHLGKPKGKRVDSLSLAPAAKRLGEYLGMEVPLAPDCIGSEVEKMAAELKPGQVMMLENLRFHAEEQAKTPEERGDFGKQLAALADIYVNDAFGVAHRANASVVDVPYAAKECCAGFLLKLEWEYL 181          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ROSCS (Phosphoglycerate kinase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pgk PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.579e-45
Identity = 106/188 (56.38%), Postives = 127/188 (67.55%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELL--GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            AKK++   ++ D  GKR  VRVD NVPL+ N  ITDD R+RAA+PTI+YL+ HGA VIL SHLGRPK  V     L P+V RL+ELL     VK +    G   E    ++  G VL+LEN RF   EE ND   A++LA L D+YVNDAFGSAHRAHASTEGVA+FL P+VAGFLM  EL  L GA+
Sbjct:    2 AKKTI---RDIDWSGKRALVRVDFNVPLE-NGQITDDTRIRAALPTIRYLLEHGAAVILMSHLGRPKNKVVESMRLAPVVARLAELLPEAKAVKGSQATTGPAAEAAARDLKPGEVLVLENTRFDPREEANDESMARELAKLGDVYVNDAFGSAHRAHASTEGVARFL-PAVAGFLMEAELAALQGAL 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ROSS1 (Phosphoglycerate kinase OS=Roseiflexus sp. (strain RS-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.104e-45
Identity = 105/188 (55.85%), Postives = 126/188 (67.02%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELL--GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            AKK++   ++ D  GKR  VRVD NVPL+ N  ITDD R+RAA+PTI+YL+ HGA VIL SHLGRPK  V     L P+V RL+ELL     +K      G   E    ++  G VL+LEN RF   EE ND   A++LA L D+YVNDAFGSAHRAHASTEGVA+FL P+VAGFLM  EL  L GA+
Sbjct:    2 AKKTI---RDIDWSGKRALVRVDFNVPLE-NGQITDDTRIRAALPTIRYLLEHGAAVILMSHLGRPKNKVVESMRLAPVVARLAELLPEAKAIKGTQATTGPAAEAAAQDLKPGEVLVLENTRFDPREEANDESMARELAKLGDVYVNDAFGSAHRAHASTEGVARFL-PAVAGFLMEAELAALQGAL 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_AZOC5 (Phosphoglycerate kinase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=pgk PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.104e-45
Identity = 96/178 (53.93%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L EADL GKRV VRVDLNVP+D+   +TDD R++A +PTI+ +   G K IL SH GRPKG     SL P+   + E LG  V  A DCIG + E  V+ +  G VL+LEN RFH  EEKN  +F ++LA+L D+YVNDAF +AHRAHASTEG+A  L P+ AG  M KEL+ L  A+
Sbjct:    7 LDEADLAGKRVLVRVDLNVPMDEG-RVTDDTRIQAILPTIRAITEKGGKAILLSHFGRPKGRDASQSLAPVAAAVGERLGAPVAFAGDCIGSDAEAAVSTLAPGAVLVLENTRFHAGEEKNAADFVQQLAALGDIYVNDAFSAAHRAHASTEGLAHKL-PAFAGRSMQKELEALAKAL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_RUBXD (Phosphoglycerate kinase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=pgk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45
Identity = 97/179 (54.19%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++ +L+GK+V VRVD NVP+     +TDD R+R A+PTI+YL+  GA+V L SHLGRPKG   P+Y + P+  RL ELLG  V+  +   G EV + + E+ E GV+LLEN RF+  E KNDP FA +LA   DLYVNDAFG+AHRAHA+T GVA+ L P+ AGFL+ +ELDYL G +
Sbjct:    6 VRDLELRGKKVLVRVDFNVPVKGG-EVTDDTRIRRALPTIRYLLQRGARVALISHLGRPKGEPDPRYRMDPVARRLEELLGEPVRKLDTATGPEVGRALEEL-ERGVILLENSRFYPGETKNDPAFAAELAGPFDLYVNDAFGAAHRAHATTVGVAERL-PAAAGFLLEQELDYLDGVL 181          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HERA2 (Phosphoglycerate kinase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pgk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45
Identity = 96/172 (55.81%), Postives = 113/172 (65.70%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            +++    GKR  VRVD NVPLD    +TDD R+RAA+PTI YL+  GA VIL SHLGRPK  V  ++ LKP+   L  LL   V       G E E     +  G VLLLEN RF   EE NDP  A++LA L D+YVNDAFG+AHRAHASTEG+AKFL P+VAGFLM  EL
Sbjct:    6 IRDVAWSGKRALVRVDFNVPLDQARKVTDDTRIRAALPTINYLLEQGASVILMSHLGRPKKKVAEEFRLKPVADHLQSLLDAPVNYIQTTTGAEAEAAAQALQAGQVLLLENTRFDPREESNDPAMAEELAKLGDIYVNDAFGAAHRAHASTEGLAKFL-PAVAGFLMEAEL 176          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HELHP (Phosphoglycerate kinase OS=Helicobacter hepaticus GN=pgk PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.041e-44
Identity = 87/185 (47.03%), Postives = 129/185 (69.73%), Query Frame = 3
Query:  111 KSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLM-GHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            K+   +++ D+K KRV +RVD NVP+D++ +I+DD R+R A+PTI Y +  H   ++L SHLGRPKG   ++SLK ++ R+  LLG ++  A     E VE +  +   G V+LLEN+RF++ EEKND E + KLAS+ D+Y+NDAFG++HRAH+ST G+AK+ K  VAG L+ KE+D    A++
Sbjct:   10 KNTKSVRDIDVKDKRVLIRVDFNVPMDEDFDISDDTRIREALPTINYCIDNHAQNIVLVSHLGRPKGRNAEFSLKHVLKRVERLLGRDIAFAETI--ENVENLQQQSKSGSVILLENIRFYEGEEKNDEELSTKLASICDVYINDAFGTSHRAHSSTCGIAKYAKECVAGLLLKKEIDSFAKAMA 192          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CLOB8 (Phosphoglycerate kinase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=pgk PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.041e-44
Identity = 97/180 (53.89%), Postives = 128/180 (71.11%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMAND--CIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++ ++ GK+V VR D NVPL D + ITD+NR+  A+PTIKYL+  GAKVIL SHLG+        SL P+  RLSE+LG EV  A D   +GE  +K V+E+ +G ++LLEN R  KEE KN PEF+K+LASLAD++VNDAFG+AHRAH ST GV  +L  +V G+L+ KEL +L  AV
Sbjct:    8 IEDIEVSGKKVLVRCDFNVPLKDGV-ITDENRLVGALPTIKYLVEKGAKVILCSHLGKDASK----SLAPVATRLSEMLGKEVVFARDEEVVGENAKKAVSEMKDGDIVLLENTRCRKEETKNIPEFSKELASLADVFVNDAFGTAHRAHCSTVGVTDYLDTAVCGYLIQKELKFLGNAV 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HELPY (Phosphoglycerate kinase OS=Helicobacter pylori GN=pgk PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.320e-44
Identity = 93/183 (50.82%), Postives = 129/183 (70.49%), Query Frame = 3
Query:   96 KMAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELD 641
            KM+  ++V  ++E ++  KRV +RVD NVPLD+NLNITDD R+R ++PTI+Y + + AK +IL SHLGRPKGV  K SLKP + RL  LL  EV  + + +  ++++ + E     + LLEN+RF + EE+ND   AK LASL D++VNDAFG++HR HAST G AKF    V+GFL+ KE+D
Sbjct:    4 KMSFMQNVKNIQEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKAKDIILVSHLGRPKGVEEKLSLKPFLKRLERLLNHEVVFSQNIV--QLKQALNENAPTRIFLLENIRFLRGEEENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFAPIKVSGFLLKKEID 184          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_SYNFM2.740e-4551.74Phosphoglycerate kinase OS=Syntrophobacter fumarox... [more]
PGK_DESAD2.740e-4554.19Phosphoglycerate kinase OS=Desulfovibrio salexigen... [more]
PGK_ROSCS3.579e-4556.38Phosphoglycerate kinase OS=Roseiflexus castenholzi... [more]
PGK_ROSS16.104e-4555.85Phosphoglycerate kinase OS=Roseiflexus sp. (strain... [more]
PGK_AZOC56.104e-4553.93Phosphoglycerate kinase OS=Azorhizobium caulinodan... [more]
PGK_RUBXD7.972e-4554.19Phosphoglycerate kinase OS=Rubrobacter xylanophilu... [more]
PGK_HERA27.972e-4555.81Phosphoglycerate kinase OS=Herpetosiphon aurantiac... [more]
PGK_HELHP1.041e-4447.03Phosphoglycerate kinase OS=Helicobacter hepaticus ... [more]
PGK_CLOB81.041e-4453.89Phosphoglycerate kinase OS=Clostridium beijerincki... [more]
PGK_HELPY2.320e-4450.82Phosphoglycerate kinase OS=Helicobacter pylori GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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