FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14268 contig Ccv1_Contig14268:4..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PORGI (Phosphoglycerate kinase OS=Porphyromonas gingivalis GN=pgk PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.029e-44
Identity = 93/196 (47.45%), Postives = 126/196 (64.29%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKN-----------------------DPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKEL 638
            +++ +  GK+ FVRVD NVPLDDN  ITDD R+RAA+PT++ ++  G   I+ SHLGRPKGV P++SL+ ++P +SELLGV+V  A+DCIG +     A++  G VLLLEN+RF+ EEE                           EF +KLAS+AD YVNDAFG+AHRAHAST  +A +      + G+LM KE+
Sbjct:    3 IEQFNFAGKKAFVRVDFNVPLDDNFKITDDTRIRAALPTLRKIIADGGMTIIGSHLGRPKGVAPEFSLRHILPHVSELLGVDVLFADDCIGADAMDKAAKLKAGQVLLLENLRFYAEEEGKPRGLSDDASDEEKAAAKKAVKAAQKEFTQKLASMADCYVNDAFGTAHRAHASTALIADYFDRDHKMFGYLMEKEV 198          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_METPB (Phosphoglycerate kinase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=pgk PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.029e-44
Identity = 96/170 (56.47%), Postives = 119/170 (70.00%), Query Frame = 3
Query:  141 LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L+GKRV +RVDLNVP++    +TD  R+   VPTI+ +   G +VIL +H GRPKG   PK SLKP++P LSE LG  V    DC+GE   K VA + +G VLLLEN R+H  EEKN PEFA+ LA+  DLYVN+AF +AHRAHASTEG+A+ L P+ AG LM  ELD L
Sbjct:   13 LQGKRVLLRVDLNVPMEGG-RVTDATRIERVVPTIREIAEAGGRVILLAHFGRPKGKPEPKDSLKPILPTLSEKLGRPVAFGEDCVGEAAAKAVAALKDGDVLLLENTRYHAGEEKNAPEFAQALAANGDLYVNEAFSAAHRAHASTEGLARLL-PAYAGRLMQAELDAL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HELPJ (Phosphoglycerate kinase OS=Helicobacter pylori J99 GN=pgk PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.029e-44
Identity = 94/183 (51.37%), Postives = 128/183 (69.95%), Query Frame = 3
Query:   96 KMAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELD 641
            KM+  ++V  ++E D+  KRV +RVD NVPLD+NLNITDD R+R ++PTI++ + + AK +IL SHLGRPKGV  K SLKP + RL  LL  EV  + +    ++++ + E     + LLEN+RF K EE+ND   AK LASL D++VNDAFG++HR HAST G AKF    V+GFL+ KE+D
Sbjct:    4 KMSFMQNVKNIQEVDVNHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQFCIDNKAKDIILVSHLGRPKGVEEKLSLKPFLKRLERLLNHEVVFSQNIA--QLKQALNENAPTRIFLLENIRFLKGEEENDENLAKDLASLCDVFVNDAFGTSHRKHASTYGTAKFAPIKVSGFLLKKEID 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PENCH (Phosphoglycerate kinase OS=Penicillium chrysogenum GN=PGKA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.957e-44
Identity = 99/192 (51.56%), Postives = 125/192 (65.10%), Query Frame = 3
Query:  132 EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE--------------KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            + DLKGKRV +RVD NVPLD+N N+T+  R+  A+PTIKY + +G K V+L SHLGRP G V PKYSLKP+VP L ELLG  V    DCIG + E+ V +  +G V+LLEN+RFH EEE              K D + +  L +L D+YVNDAFG+A RAH+S  GV   L    AGFL+ KEL+Y   A+
Sbjct:   11 DVDLKGKRVLIRVDFNVPLDENENVTNPQRIVGALPTIKYAIDNGRKAVVLMSHLGRPDGKVNPKYSLKPVVPVLEELLGKSVTFTEDCIGPQTEETVNKASDGQVILLENLRFHAEEEGSSKDAEGKKVKADKADVDRSASLTALGDVYVNDAFGTAQRAHSSMVGVD--LPQKAAGFLVKKELEYFAKAL 200          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAUSK (Phosphoglycerate kinase OS=Caulobacter sp. (strain K31) GN=pgk PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.957e-44
Identity = 99/179 (55.31%), Postives = 119/179 (66.48%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L  ADL GKR  VRVD NVP+D    ITDD R+RAA+PTI+YL   GAKV+L +H  RPKG V P+ SL  +   LS+LL   V  A DC+G +   +V  +  GGV L ENVRFH  EEKND +FA +LA   DLYVNDAF +AHRAHASTE +A+ L PS  G  M +ELD L  A+
Sbjct:    6 LDTADLAGKRALVRVDFNVPVDGG-KITDDTRLRAALPTIRYLSSKGAKVVLLAHFDRPKGKVVPEMSLAFVAEPLSKLLEQPVAFAADCVGPQARAVVDALENGGVALFENVRFHAGEEKNDADFAAQLAENGDLYVNDAFSAAHRAHASTEALARIL-PSYPGLAMQRELDALDAAL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_RHOPA (Phosphoglycerate kinase OS=Rhodopseudomonas palustris GN=pgk PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.167e-44
Identity = 93/176 (52.84%), Postives = 118/176 (67.05%), Query Frame = 3
Query:  111 KSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKEL 638
            K+   L + D+KGKRV +RVDLNVP+D    +TD  R+   +PTI  L G GAKVIL +H GRPKG   K SLKP+   L++++   V  A+DCIGE   K +A + +G +L LEN RFH EEEKNDP F  KLA L D++VNDAF +AHRAHA+TEG+   L P+ AG  M  EL
Sbjct:    3 KTFRTLDDVDVKGKRVLLRVDLNVPMDAG-KVTDTTRLERVMPTITELSGKGAKVILLAHFGRPKGRDDKNSLKPVAAALADVIKKPVGFADDCIGEPAAKAIAAMADGDILCLENTRFHPEEEKNDPAFVAKLAELGDIWVNDAFSAAHRAHATTEGLGHKL-PAYAGRTMQAEL 176          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BRAJA (Phosphoglycerate kinase OS=Bradyrhizobium japonicum GN=pgk PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.167e-44
Identity = 96/178 (53.93%), Postives = 118/178 (66.29%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L + D+KGKRV +RVDLNVP++ N  +TD  R+    PTI  L   G KVIL +H GRPKG   K SLKP+   LS++L   V  A+DCIGE     VA + +G +L LEN RFHKEEEKNDP F  +LA L D++VNDAF +AHRAHASTEG+   L P+ AG  M  ELD L  A+
Sbjct:    8 LDDVDVKGKRVLLRVDLNVPME-NGRVTDATRLERVAPTITELADKGGKVILLAHFGRPKGRDAKESLKPVTEALSKVLNKPVAFADDCIGEPAATAVAALKDGDILCLENTRFHKEEEKNDPAFVAELAKLGDIWVNDAFSAAHRAHASTEGLGHKL-PAYAGRTMQAELDALEKAL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_WOLSU (Phosphoglycerate kinase OS=Wolinella succinogenes GN=pgk PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.749e-44
Identity = 87/180 (48.33%), Postives = 127/180 (70.56%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++ +++GKRV +RVD NVP+D + NI+DD R+R A+PTI + + +GAK ++L SHLGRP+G + ++SLK ++ RL  LL   V       G  V  ++A +P+  V+LLEN+RF + EEKND + +K LASL D+Y+NDAFG++HR HAST GVAKF    VAG L+ KE+D    A++
Sbjct:   14 IRDVEIEGKRVLIRVDFNVPMDSDFNISDDTRIREAIPTINHCIDNGAKSIVLVSHLGRPRGKSSEFSLKHILKRLERLLNRSVIFVESLEG--VSSVMATLPQKSVILLENIRFLEGEEKNDEKLSKNLASLCDIYINDAFGASHRKHASTYGVAKFAPVKVAGLLLKKEIDSFAKALA 191          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_WOLPP (Phosphoglycerate kinase OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=pgk PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.749e-44
Identity = 94/183 (51.37%), Postives = 122/183 (66.67%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +V  ++  D   K V +RVD NVP+  N  I D  R+  A+PTI+YL   GAKVI+ SH GRPK      SLK +V  LS LL  EVK  +DCIGE V++ +  +  G ++LLEN+RF+KEEE+ND  FAK+LASLAD+Y+NDAF  +HRAHAS   + +FL PS AGF +  EL YL  A+S
Sbjct:    3 NVPSIESCDFHNKNVLLRVDFNVPIK-NGRICDATRILRALPTIQYLANAGAKVIVISHFGRPKAKDSNLSLKNVVETLSRLLSKEVKFIDDCIGERVQRAINAMDGGDIILLENLRFYKEEEQNDSNFAKQLASLADIYINDAFSCSHRAHASISRITEFL-PSYAGFCLQDELKYLEQAIS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAUCR (Phosphoglycerate kinase OS=Caulobacter crescentus GN=pgk PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.814e-44
Identity = 96/179 (53.63%), Postives = 121/179 (67.60%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L  ADL GKR  VRVD NVP+D    + DD R++AA+PTI++L   GAKV+L +H  RPKG V P+ SL  +   L+ LLG  V    DC+G    ++V  + +GGV LLENVRFH  EEKND EFAK LA+  D+YVNDAF +AHRAHASTEG+AK L P+  G  M +EL+ L  A+
Sbjct:    6 LDTADLAGKRALVRVDFNVPVDGG-KVADDTRLKAALPTIRFLADKGAKVVLLAHFDRPKGKVVPEMSLAFVAEPLAALLGAPVAFVGDCVGPAAAEVVNGLADGGVALLENVRFHAGEEKNDAEFAKALAANGDVYVNDAFSAAHRAHASTEGLAKLL-PAYPGVSMQRELEALDAAL 182          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PORGI3.029e-4447.45Phosphoglycerate kinase OS=Porphyromonas gingivali... [more]
PGK_METPB3.029e-4456.47Phosphoglycerate kinase OS=Methylobacterium populi... [more]
PGK_HELPJ3.029e-4451.37Phosphoglycerate kinase OS=Helicobacter pylori J99... [more]
PGK_PENCH3.957e-4451.56Phosphoglycerate kinase OS=Penicillium chrysogenum... [more]
PGK_CAUSK3.957e-4455.31Phosphoglycerate kinase OS=Caulobacter sp. (strain... [more]
PGK_RHOPA5.167e-4452.84Phosphoglycerate kinase OS=Rhodopseudomonas palust... [more]
PGK_BRAJA5.167e-4453.93Phosphoglycerate kinase OS=Bradyrhizobium japonicu... [more]
PGK_WOLSU6.749e-4448.33Phosphoglycerate kinase OS=Wolinella succinogenes ... [more]
PGK_WOLPP6.749e-4451.37Phosphoglycerate kinase OS=Wolbachia pipientis sub... [more]
PGK_CAUCR8.814e-4453.63Phosphoglycerate kinase OS=Caulobacter crescentus ... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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