FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAUCN (Phosphoglycerate kinase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.814e-44
Identity = 96/179 (53.63%), Postives = 121/179 (67.60%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L  ADL GKR  VRVD NVP+D    + DD R++AA+PTI++L   GAKV+L +H  RPKG V P+ SL  +   L+ LLG  V    DC+G    ++V  + +GGV LLENVRFH  EEKND EFAK LA+  D+YVNDAF +AHRAHASTEG+AK L P+  G  M +EL+ L  A+
Sbjct:    6 LDTADLAGKRALVRVDFNVPVDGG-KVADDTRLKAALPTIRFLADKGAKVVLLAHFDRPKGKVVPEMSLAFVAEPLAALLGAPVAFVGDCVGPAAAEVVNGLADGGVALLENVRFHAGEEKNDAEFAKALAANGDVYVNDAFSAAHRAHASTEGLAKLL-PAYPGVSMQRELEALDAAL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_WOLTR (Phosphoglycerate kinase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.151e-43
Identity = 95/179 (53.07%), Postives = 125/179 (69.83%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            ++  DL GK V +RVD N+P+  N  + D  RV  ++PTI++L+  GAKVI+ SH GRP+      SLK +V  LS+LL  EVK  +DCIG++V+K+V  I    V+LLEN+RF+KEEE+ND  FAK+LASLAD+YVNDAF  +HRAHAS   + +FL PS AGF +  EL YL  AVS
Sbjct:    7 IENCDLHGKAVLLRVDFNIPIK-NGKVHDATRVLRSLPTIRHLVNAGAKVIIISHFGRPRAKDNNLSLKNVVKTLSQLLNKEVKFVDDCIGKKVQKVVNAIAIRDVILLENLRFYKEEEQNDANFAKQLASLADVYVNDAFSCSHRAHASISRITEFL-PSYAGFCLQDELRYLEKAVS 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_NAUPA (Phosphoglycerate kinase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.504e-43
Identity = 89/176 (50.57%), Postives = 122/176 (69.32%), Query Frame = 3
Query:  129 KEADLK-GKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            K+ D K G  VF+R D NVPLD+  NITDD R+R A+PTIKYL+ +  K++++SHLGRPKG    KYSLKP+  RLS LL  +V MA D +G + ++  +++  G +LLLENVRF   E KND  FAK+L+   + Y+NDAFG +HRAHAS E + +F   +   AGFL+ KE+++
Sbjct:    7 KDLDFKPGSSVFLRCDFNVPLDEFGNITDDRRIRMALPTIKYLLDNECKIVIASHLGRPKGEFDEKYSLKPVAKRLSHLLKQDVIMAKDVVGPDAKEKASKLQNGEILLLENVRFDPRETKNDEGFAKELSEFGEFYINDAFGVSHRAHASVEAITRFYDNEHKAAGFLLLKEINF 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_FINM2 (Phosphoglycerate kinase OS=Finegoldia magna (strain ATCC 29328) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.504e-43
Identity = 94/181 (51.93%), Postives = 133/181 (73.48%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVK------MANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            LK+ +++ KRV VRVD NVP+ + + ITD NR+ A++ TIKYL+ + AKVIL SHLGRPKG   P++SLKP+  +LSE++G +VK      + +D + EE +K+  +     ++L++N RF KEEEKND  F+K+L+ LADLYVNDAFG++HRAHAS  GV+KFL PS  GFL+ KE++ +
Sbjct:    6 LKDLNVENKRVLVRVDFNVPIKEGI-ITDTNRIEASLTTIKYLIDNNAKVILMSHLGRPKGEPKPEFSLKPVAQKLSEMIGQDVKFIDSDKVVDDSVIEESKKLQPK----EIMLIQNTRFRKEEEKNDQTFSKELSQLADLYVNDAFGTSHRAHASNVGVSKFL-PSAVGFLVQKEIEIM 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DICDI (Phosphoglycerate kinase OS=Dictyostelium discoideum GN=pgkA PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.504e-43
Identity = 99/195 (50.77%), Postives = 128/195 (65.64%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-----------KNDP----EFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L + D+KGKRV +RVD NVPLD N NIT   R+ A++PT++Y + +GAK ++L SHLGRP G V P+YSLKP+V  L + L   +K  +DC+GE+VEK  A   EG V+LLEN+RFH EEE           K +P    EF + L  L D+YVNDAFG+AHRAH+S  G+   L    AGFLM KEL+Y   A+
Sbjct:   12 LDKVDVKGKRVLIRVDYNVPLDKNNNITSTQRIDASIPTLEYCLKNGAKSIVLMSHLGRPDGLVKPEYSLKPVVKVLEDQLKRPIKFLSDCVGEQVEKECANPEEGTVILLENLRFHIEEEGSGVDAEGKKVKANPEKVKEFRESLTKLGDVYVNDAFGTAHRAHSSMVGIN--LPQKAAGFLMKKELEYFAKAL 204          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_YARLI (Phosphoglycerate kinase OS=Yarrowia lipolytica GN=PGK1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.964e-43
Identity = 102/195 (52.31%), Postives = 131/195 (67.18%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE-----------KNDP----EFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +K+ DLK KRVF+RVD NVPLD    IT++ R+ AA+P+IKY +  GAK VIL+SHLGRP G    KYSLKP+   LS+LLG  V   +DC+G +VE+ V++  +G V+LLEN+RFH EEE           K DP    EF K L SLAD+YVNDAFG+AHRAH+S  G+   L    AGFL+ KEL++   A+
Sbjct:    9 IKDLDLKNKRVFIRVDFNVPLDGT-TITNNQRIVAALPSIKYAIDQGAKAVILASHLGRPNGQRVEKYSLKPVQAELSKLLGKPVTFLDDCVGPKVEEEVSKAKDGEVILLENLRFHPEEEGSHKDADGKKIKADPAKVEEFRKSLTSLADVYVNDAFGTAHRAHSSMVGIE--LPQRAAGFLVAKELEFFAKAL 200          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_EMENI (Phosphoglycerate kinase OS=Emericella nidulans GN=pgkA PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.964e-43
Identity = 100/197 (50.76%), Postives = 127/197 (64.47%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLD--DNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKND---------------PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            + + DLK KRV +RVD NVPLD  DN  IT+  R+  A+PTIKY + +GAK VIL SHLGRP G   PKYSLKP+VP+L ELLG +V    DC+G EVE+ V +   G V+LLEN+RFH EEE +                 +F K L +L D+Y+NDAFG+AHRAH+S  GV   L    +GFL+ KEL+Y   A+
Sbjct:    9 ITDVDLKDKRVLIRVDFNVPLDKNDNTTITNPQRIVGALPTIKYAIDNGAKAVILMSHLGRPDGKKNPKYSLKPVVPKLKELLGRDVIFTEDCVGPEVEETVNKASGGQVILLENLRFHAEEEGSSKDADGNKVKADKDAVAQFRKGLTALGDIYINDAFGTAHRAHSSMVGVD--LPQKASGFLVKKELEYFAKAL 203          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMC5 (Phosphoglycerate kinase OS=Campylobacter curvus (strain 525.92) GN=pgk PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.964e-43
Identity = 87/176 (49.43%), Postives = 120/176 (68.18%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            + E +L  KRVF+R D NVP+D+ LNITDD R+R+A+PTI+Y + +G  V+L+SHLGRPK G   K+SLK +  RLS LL  +V  AND IG + +   + +  G +L+LEN+RF K E KND   A +LA   ++Y+NDAFG  HRAHAS E + KF   +   AGFL+ KE+++
Sbjct:    7 ISELNLAKKRVFIRCDFNVPMDEFLNITDDRRIRSAIPTIRYCLDNGCSVVLASHLGRPKSGFEEKFSLKGVAKRLSRLLDRDVIFANDVIGSDAQNKASALKSGEILMLENLRFEKGETKNDEILAGELAKFGEIYINDAFGVCHRAHASVEAITKFYDDEHKAAGFLLQKEINF 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_WOLPM (Phosphoglycerate kinase OS=Wolbachia pipientis wMel GN=pgk PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.349e-43
Identity = 91/183 (49.73%), Postives = 125/183 (68.31%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            ++  ++  DL  K V +RVD NVP+ D   I D  R+  A+PTI+YL+   AK+I+ SH GRPK      SLK ++  LS+LL  +VK  +DC GE+V++ V+ +  G ++LLEN+RF+KEEE++D  FAK+LASLAD+YVNDAF  +HRAHAS   + +FL PS AGF +  EL YL  AVS
Sbjct:    2 NIPSIENCDLHNKTVLLRVDFNVPIKDG-EIRDVTRILRALPTIQYLVNASAKIIIISHFGRPKARDNNLSLKNVIDTLSQLLNKKVKFIDDCFGEKVQRAVSVMDAGDIILLENLRFYKEEEQSDSNFAKQLASLADIYVNDAFSCSHRAHASISRITEFL-PSYAGFCLQDELKYLEKAVS 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_PICPA (Phosphoglycerate kinase OS=Pichia pastoris GN=PGK1 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.349e-43
Identity = 105/203 (51.72%), Postives = 133/203 (65.52%), Query Frame = 3
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVI-LSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE----------KNDPE----FAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            M+    +SV K+ D+ GKRVF+RVD NVPLD +  IT++ R+ AA+PTI+Y++ H  KV+ L+SHLGRP G V PK+SLKP+   LS LLG +V   ND +G EVEK V     G V+LLEN+RFH EEE          K D E    F K+L +LAD+YVNDAFG+AHRAH+S  G    L+   AGFLM KEL Y   A+
Sbjct:    1 MSLSNKLSV-KDLDVAGKRVFIRVDFNVPLDGD-KITNNQRIVAALPTIQYVLDHKPKVVVLASHLGRPNGEVNPKFSLKPVAAELSSLLGKKVTFLNDSVGPEVEKAVNSASNGEVILLENLRFHIEEEGSQKKDGQKIKADKEAVARFRKQLTALADVYVNDAFGTAHRAHSSMVGFE--LEQRAAGFLMAKELTYFAKAL 199          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CAUCN8.814e-4453.63Phosphoglycerate kinase OS=Caulobacter crescentus ... [more]
PGK_WOLTR1.151e-4353.07Phosphoglycerate kinase OS=Wolbachia sp. subsp. Br... [more]
PGK_NAUPA1.504e-4350.57Phosphoglycerate kinase OS=Nautilia profundicola (... [more]
PGK_FINM21.504e-4351.93Phosphoglycerate kinase OS=Finegoldia magna (strai... [more]
PGK_DICDI1.504e-4350.77Phosphoglycerate kinase OS=Dictyostelium discoideu... [more]
PGK_YARLI1.964e-4352.31Phosphoglycerate kinase OS=Yarrowia lipolytica GN=... [more]
PGK_EMENI1.964e-4350.76Phosphoglycerate kinase OS=Emericella nidulans GN=... [more]
PGK_CAMC51.964e-4349.43Phosphoglycerate kinase OS=Campylobacter curvus (s... [more]
PGK_WOLPM3.349e-4349.73Phosphoglycerate kinase OS=Wolbachia pipientis wMe... [more]
PGK_PICPA3.349e-4351.72Phosphoglycerate kinase OS=Pichia pastoris GN=PGK1... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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