FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_RHILW (Phosphoglycerate kinase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=pgk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.713e-43
Identity = 94/172 (54.65%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  135 ADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +D++GKRV VRVDLNVP+ D   +TD  R+    PTI  L   GAKVIL +H GRPK G +P+ SL  + P + E+L   V  A+DCIGE     VA + +G +LLLEN RFHK EEKNDP+F K LA+  D+YVNDAF +AHRAHASTEG+A  L P+ AG  M  EL+ L
Sbjct:   11 SDIRGKRVLVRVDLNVPVKDG-KVTDTTRIERVAPTILELSEKGAKVILLAHFGRPKDGPSPELSLSLIAPSVEEVLDHAVSTASDCIGEAAASAVAAMNDGDILLLENTRFHKGEEKNDPDFTKALAANGDIYVNDAFSAAHRAHASTEGLAHHL-PAYAGRTMQAELEAL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GLUOX (Phosphoglycerate kinase OS=Gluconobacter oxydans GN=pgk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.713e-43
Identity = 93/179 (51.96%), Postives = 120/179 (67.04%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L   D +GKRV VR DLNVP+ D + ITDD R++   PTI+ L+  GA+V++ SH  RPKG V P  SL+P+  +L ++LG  V    +C+G  VE  V  + +G +++LEN RFH  EE NDPEFAK LA   D++VNDAF +AHRAHASTEGVA+ L PS AG LM  EL  L  A+
Sbjct:    6 LDGVDARGKRVLVRADLNVPMHDGV-ITDDTRLQRVAPTIRELVDKGARVVVFSHFDRPKGQVVPAMSLRPIALKLGQILGQPVGFVAECVGPTVEAAVGAMADGDIIVLENTRFHAGEEANDPEFAKALAQNGDIFVNDAFSAAHRAHASTEGVARDL-PSFAGRLMQAELSALSAAL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_RHOCS (Phosphoglycerate kinase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=pgk PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.745e-43
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            L +  + GK V VR DLNVP+ D   ++D  R+    PT+K L G GAKV++ SH GRPKG    K SL+ +VP L   LG+ V  A DC+GE     +A I  G V+LLEN RFH  EEKNDPE A+++A+L D+YVNDAF +AHRAHASTEG+A  L PS AG LM  EL+ L  A++
Sbjct:    6 LDDLSVAGKTVLVRGDLNVPVQDG-RVSDTTRLDRLAPTLKELAGKGAKVVVLSHFGRPKGGPDAKNSLRQVVPALEAALGLPVAFAEDCVGESARAAIAAIEPGQVVLLENTRFHAGEEKNDPELARQMAALGDIYVNDAFSAAHRAHASTEGIAHLL-PSAAGRLMQAELEALGKALA 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_METC4 (Phosphoglycerate kinase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=pgk PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.745e-43
Identity = 92/170 (54.12%), Postives = 117/170 (68.82%), Query Frame = 3
Query:  141 LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L+GKRV +RVDLNVP++    +TD  R+   VPTI+ +   G +VIL +H GRPKG   PK SLKP++  LSE LG  V    DC+GE     VA + +G V+LLEN R+H  EEKNDP+FAK LA+  D+YVN+AF +AHRAHASTE +A+ L P+ AG LM  ELD L
Sbjct:   13 LQGKRVLLRVDLNVPMEGG-RVTDATRIERVVPTIREIADAGGRVILLAHFGRPKGKPDPKDSLKPILSTLSEKLGRPVAFGEDCVGEAAASAVAALKDGDVILLENTRYHAGEEKNDPDFAKALAANGDIYVNEAFSAAHRAHASTEALARLL-PAYAGRLMQAELDAL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LISIN (Phosphoglycerate kinase OS=Listeria innocua GN=pgk PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.745e-43
Identity = 99/185 (53.51%), Postives = 124/185 (67.03%), Query Frame = 3
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            V+ + DLK K+V VRVD NVP+ D   IT+DNR+ AA+PTI+Y++    K IL SHLG+ K    K   SL+P+  RLSELLG EVK      G E+EK V E+ +G VLL EN RF     K+E KNDPE  K  ASL D++VNDAFG+AHRAHAS  G+A  L+ S AGFLM KE+ ++ G V
Sbjct:    5 VVTDLDLKNKKVLVRVDFNVPMKDG-KITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAARLSELLGKEVKFVPTTRGPELEKAVDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLE-SAAGFLMEKEIKFIGGVV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_METEP (Phosphoglycerate kinase OS=Methylobacterium extorquens (strain PA1) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.273e-42
Identity = 91/170 (53.53%), Postives = 117/170 (68.82%), Query Frame = 3
Query:  141 LKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT-PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L+GKRV +RVDLNVP++    +TD  R+   VPTI+ +   G +VIL +H GRPKG   PK SLKP++  LSE LG  V    DC+GE     +A + +G V+LLEN R+H  EEKNDP+FAK LA+  D+YVN+AF +AHRAHASTE +A+ L P+ AG LM  ELD L
Sbjct:   13 LQGKRVLLRVDLNVPMEGG-RVTDATRIERVVPTIREIADAGGRVILLAHFGRPKGKPDPKDSLKPILSTLSEKLGRPVAFGEDCVGEAAASAIAALKDGDVILLENTRYHAGEEKNDPDFAKALAANGDIYVNEAFSAAHRAHASTEALARLL-PAYAGRLMQAELDAL 180          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_WOLWR (Phosphoglycerate kinase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.662e-42
Identity = 89/183 (48.63%), Postives = 125/183 (68.31%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            ++  ++  DL  K V +RVD NVP+ D   I D  R+  A+PTI+YL+   AK+I+ SH GRPK      SLK ++  LS+LL  +VK  +DC+GE+V+K V+ +  G ++LLEN+RF++ E++ND  FA++LASLAD+YVNDAF  +HRAHAS   + +FL PS AGF +  EL YL  AVS
Sbjct:    2 NIPSIENCDLHNKAVLLRVDFNVPIKDG-EIRDVTRILRALPTIQYLVNASAKIIIISHFGRPKARDNNLSLKNVIDTLSQLLNKKVKFIDDCVGEKVQKAVSAMDAGDIILLENLRFYEGEKENDANFARQLASLADIYVNDAFSCSHRAHASISRITEFL-PSYAGFCLQDELKYLEKAVS 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_RHOS5 (Phosphoglycerate kinase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.662e-42
Identity = 95/180 (52.78%), Postives = 122/180 (67.78%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELL-GVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L + DL GK V VRVD+NVP++    +TD  R+   VPT++ ++  G K +L +H GRPKG V  + SL+ ++P L + L G +V  A DC+GEE EK VA + EG VLLLEN RFH  EEKNDPE A  +A L D+YVNDAF +AHRAH+STEG+A+ L PS AG LM  EL  L  A+
Sbjct:    6 LDDMDLAGKVVLVRVDVNVPMEKG-EVTDATRIEKIVPTVEDILKKGGKPVLLAHFGRPKGKVVDEMSLRLVLPALQKALPGTKVSFAPDCVGEEAEKAVAAMLEGEVLLLENTRFHAGEEKNDPELAAAMAKLGDVYVNDAFSAAHRAHSSTEGIARLL-PSAAGRLMEAELKALDAAL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LISW6 (Phosphoglycerate kinase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.662e-42
Identity = 98/185 (52.97%), Postives = 124/185 (67.03%), Query Frame = 3
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            V+ + DLK K+V VRVD NVP+ D   IT+DNR+ AA+PTI+Y++    K IL SHLG+ K    K   SL+P+  RLSELLG EVK      G E+EK + E+ +G VLL EN RF     K+E KNDPE  K  ASL D++VNDAFG+AHRAHAS  G+A  L+ S AGFLM KE+ ++ G V
Sbjct:    5 VVTDLDLKDKKVLVRVDFNVPMKDG-KITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAARLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLE-SAAGFLMEKEIKFIGGVV 187          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LISMH (Phosphoglycerate kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.662e-42
Identity = 98/185 (52.97%), Postives = 124/185 (67.03%), Query Frame = 3
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            V+ + DLK K+V VRVD NVP+ D   IT+DNR+ AA+PTI+Y++    K IL SHLG+ K    K   SL+P+  RLSELLG EVK      G E+EK + E+ +G VLL EN RF     K+E KNDPE  K  ASL D++VNDAFG+AHRAHAS  G+A  L+ S AGFLM KE+ ++ G V
Sbjct:    5 VVTDLDLKDKKVLVRVDFNVPMKDG-KITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAARLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLE-SAAGFLMEKEIKFIGGVV 187          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_RHILW5.713e-4354.65Phosphoglycerate kinase OS=Rhizobium leguminosarum... [more]
PGK_GLUOX5.713e-4351.96Phosphoglycerate kinase OS=Gluconobacter oxydans G... [more]
PGK_RHOCS9.745e-4352.22Phosphoglycerate kinase OS=Rhodospirillum centenum... [more]
PGK_METC49.745e-4354.12Phosphoglycerate kinase OS=Methylobacterium chloro... [more]
PGK_LISIN9.745e-4353.51Phosphoglycerate kinase OS=Listeria innocua GN=pgk... [more]
PGK_METEP1.273e-4253.53Phosphoglycerate kinase OS=Methylobacterium extorq... [more]
PGK_WOLWR1.662e-4248.63Phosphoglycerate kinase OS=Wolbachia sp. subsp. Dr... [more]
PGK_RHOS51.662e-4252.78Phosphoglycerate kinase OS=Rhodobacter sphaeroides... [more]
PGK_LISW61.662e-4252.97Phosphoglycerate kinase OS=Listeria welshimeri ser... [more]
PGK_LISMH1.662e-4252.97Phosphoglycerate kinase OS=Listeria monocytogenes ... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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