FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LISMF (Phosphoglycerate kinase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.662e-42
Identity = 98/185 (52.97%), Postives = 124/185 (67.03%), Query Frame = 3 
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            V+ + DLK K+V VRVD NVP+ D   IT+DNR+ AA+PTI+Y++    K IL SHLG+ K    K   SL+P+  RLSELLG EVK      G E+EK + E+ +G VLL EN RF     K+E KNDPE  K  ASL D++VNDAFG+AHRAHAS  G+A  L+ S AGFLM KE+ ++ G V
Sbjct:    5 VVTDLDLKDKKVLVRVDFNVPMKDG-KITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAARLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLE-SAAGFLMEKEIKFIGGVV 187
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LISMC (Phosphoglycerate kinase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.662e-42
Identity = 98/185 (52.97%), Postives = 124/185 (67.03%), Query Frame = 3 
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            V+ + DLK K+V VRVD NVP+ D   IT+DNR+ AA+PTI+Y++    K IL SHLG+ K    K   SL+P+  RLSELLG EVK      G E+EK + E+ +G VLL EN RF     K+E KNDPE  K  ASL D++VNDAFG+AHRAHAS  G+A  L+ S AGFLM KE+ ++ G V
Sbjct:    5 VVTDLDLKDKKVLVRVDFNVPMKDG-KITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAARLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLE-SAAGFLMEKEIKFIGGVV 187
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ELUMP (Phosphoglycerate kinase OS=Elusimicrobium minutum (strain Pei191) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.662e-42
Identity = 87/185 (47.03%), Postives = 127/185 (68.65%), Query Frame = 3 
Query:  111 KSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +++  L++ D+KGK V VRVD NVPL D   + ++ R+ A+  T+KYL+ +  KV+L SHLGRPKG V  ++SL P+   ++ + GV+V  A+DCIGE   K +AE   G ++LLEN+RFH EEEKND  FA +LA   +++V +AFG+ HRAHAST  V KFL   + G+L+ KE+ +L  A++
Sbjct:    4 ENIKKLQDLDVKGKTVLVRVDYNVPLKDG-KVDNNKRIVASEKTVKYLLDNNCKVVLMSHLGRPKGKVASEFSLAPVATEVANVFGVKVHFASDCIGEPAAKTIAEAKNGEIVLLENLRFHPEEEKNDETFAAQLAKNGEVFVQEAFGTVHRAHASTSAVTKFLNGGI-GYLVQKEVQFLGDALA 186
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMFF (Phosphoglycerate kinase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.662e-42
Identity = 87/177 (49.15%), Postives = 121/177 (68.36%), Query Frame = 3 
Query:  126 LKEADLK-GKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            +K+ + K G +VFVR D N P+D+  NITDD R+R+A+PTI+Y++  G  VIL+SHLGRPK G   K+SL P+  RLS L+  E+  AND +G + +  VA + +G VLLLEN+RF K E K+D   AK+L+  A+ YVNDAFG  HRAH+S   + KF   +   AGFL+ KE+++
Sbjct:    7 IKDINFKSGSKVFVRCDFNTPMDEFYNITDDRRIRSAIPTIRYILDQGCSVILASHLGRPKNGYEEKFSLLPVAKRLSRLIDREIIFANDVVGNDAKTKVAALKQGEVLLLENIRFEKGETKDDVALAKELSEYANYYVNDAFGVCHRAHSSVHAITKFYDEEHRAAGFLLIKEIEF 183
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_RHISN (Phosphoglycerate kinase OS=Rhizobium sp. (strain NGR234) GN=pgk PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.171e-42
Identity = 93/171 (54.39%), Postives = 114/171 (66.67%), Query Frame = 3 
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            D+ GKRV VRVDLNVP+ D   +TD  R+    PTI+ L   GAK+IL +H GRPKG      SLK + P + E+L   V  A DCIG++    +AE+ +G VLLLEN RFHK EEKNDP F   LA+  DLYVNDAF +AHRAHASTEG+A+ L P+ AG  M  EL+ L
Sbjct:   11 DIAGKRVLVRVDLNVPVKDG-QVTDTTRIERVAPTIRELSEKGAKIILLAHFGRPKGEPVADMSLKAIAPAVEEILDQRVHFAADCIGDKAANAIAEMNDGDVLLLENTRFHKGEEKNDPAFVTALAANGDLYVNDAFSAAHRAHASTEGLAQHL-PAYAGRTMQAELEAL 179
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LISMO (Phosphoglycerate kinase OS=Listeria monocytogenes GN=pgk PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.171e-42
Identity = 98/185 (52.97%), Postives = 124/185 (67.03%), Query Frame = 3 
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            V+ + DLK K+V VRVD NVP+ D   IT+DNR+ AA+PTI+Y++    K IL SHLG+ K    K   SL+P+  RLSELLG EVK      G E+EK + E+ +G VLL EN RF     K+E KNDPE  K  ASL D++VNDAFG+AHRAHAS  G+A  L+ S AGFLM KE+ ++ G V
Sbjct:    5 VVTDLDLKDKKVLVRVDFNVPMKDG-KITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAVRLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLE-SAAGFLMEKEIKFIGGVV 187
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_RHILO (Phosphoglycerate kinase OS=Rhizobium loti GN=pgk PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.835e-42
Identity = 94/184 (51.09%), Postives = 127/184 (69.02%), Query Frame = 3 
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            MAA K++  +   ++ GKRV VRVDLNVP+ D   +TD  R+    PTI  L G GAKVIL +H GRPK G +P++SL+P+    +E+LG  V  A+DC+G+     VA + +G VLL EN RF+K EEKNDP F+++LA+  D++VNDAF +AHRAH+STEG+A+ L PS AG  M  EL+ L
Sbjct:    1 MAAFKTLDDI--GNISGKRVLVRVDLNVPVADG-KVTDATRIERIAPTIAELSGKGAKVILLAHFGRPKDGPSPEFSLEPIARATAEVLGRPVGFASDCVGDMAGSAVAAMNKGDVLLFENTRFYKAEEKNDPAFSERLAANGDIFVNDAFSAAHRAHSSTEGLARLL-PSFAGRTMQAELEAL 180
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLTB (Phosphoglycerate kinase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=pgk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 97/179 (54.19%), Postives = 121/179 (67.60%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE--KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAK-FLKPSVAGFLMXKELDYL 647
            +++  L+GK+V VRVD NVP+ D   I DD R+R+A+PTI YL+   A VIL SHLGRPKG      YSL P+VP L   LG  V ++ DCIGE   + VA++  G VLLLENVRFHK EE    DP FA +LA+ AD YVNDAFG++HR HAS   V + F   + AGFLM KEL++L
Sbjct:    6 IRDLSLEGKKVLVRVDFNVPIKDG-KILDDVRIRSAMPTIHYLLKQDAAVILVSHLGRPKGGVFEEAYSLAPIVPVLEGYLGHHVPLSPDCIGEVARQAVAQLSPGRVLLLENVRFHKGEEHPDEDPSFAIELAAYADFYVNDAFGTSHRKHASVYRVPQLFPDRAAAGFLMEKELEFL 183
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLTA (Phosphoglycerate kinase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=pgk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 97/179 (54.19%), Postives = 121/179 (67.60%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE--KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAK-FLKPSVAGFLMXKELDYL 647
            +++  L+GK+V VRVD NVP+ D   I DD R+R+A+PTI YL+   A VIL SHLGRPKG      YSL P+VP L   LG  V ++ DCIGE   + VA++  G VLLLENVRFHK EE    DP FA +LA+ AD YVNDAFG++HR HAS   V + F   + AGFLM KEL++L
Sbjct:    6 IRDLSLEGKKVLVRVDFNVPIKDG-KILDDVRIRSAMPTIHYLLKQDAAVILVSHLGRPKGGVFEEAYSLAPIVPVLEGYLGHHVPLSPDCIGEVARQAVAQLSPGRVLLLENVRFHKGEEHPDEDPSFAIELAAYADFYVNDAFGTSHRKHASVYRVPQLFPDRAAAGFLMEKELEFL 183
[Close]
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLT2 (Phosphoglycerate kinase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=pgk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 97/179 (54.19%), Postives = 121/179 (67.60%), Query Frame = 3 
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE--KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAK-FLKPSVAGFLMXKELDYL 647
            +++  L+GK+V VRVD NVP+ D   I DD R+R+A+PTI YL+   A VIL SHLGRPKG      YSL P+VP L   LG  V ++ DCIGE   + VA++  G VLLLENVRFHK EE    DP FA +LA+ AD YVNDAFG++HR HAS   V + F   + AGFLM KEL++L
Sbjct:    6 IRDLSLEGKKVLVRVDFNVPIKDG-KILDDVRIRSAMPTIHYLLKQDAAVILVSHLGRPKGGVFEEAYSLAPIVPVLEGYLGHHVPLSPDCIGEVARQAVAQLSPGRVLLLENVRFHKGEEHPDEDPSFAIELAAYADFYVNDAFGTSHRKHASVYRVPQLFPDRAAAGFLMEKELEFL 183
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_LISMF1.662e-4252.97Phosphoglycerate kinase OS=Listeria monocytogenes ... [more]
PGK_LISMC1.662e-4252.97Phosphoglycerate kinase OS=Listeria monocytogenes ... [more]
PGK_ELUMP1.662e-4247.03Phosphoglycerate kinase OS=Elusimicrobium minutum ... [more]
PGK_CAMFF1.662e-4249.15Phosphoglycerate kinase OS=Campylobacter fetus sub... [more]
PGK_RHISN2.171e-4254.39Phosphoglycerate kinase OS=Rhizobium sp. (strain N... [more]
PGK_LISMO2.171e-4252.97Phosphoglycerate kinase OS=Listeria monocytogenes ... [more]
PGK_RHILO2.835e-4251.09Phosphoglycerate kinase OS=Rhizobium loti GN=pgk P... [more]
PGK_CHLTB3.703e-4254.19Phosphoglycerate kinase OS=Chlamydia trachomatis (... [more]
PGK_CHLTA3.703e-4254.19Phosphoglycerate kinase OS=Chlamydia trachomatis (... [more]
PGK_CHLT23.703e-4254.19Phosphoglycerate kinase OS=Chlamydia trachomatis (... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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