FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CAMC1 (Phosphoglycerate kinase OS=Campylobacter concisus (strain 13826) GN=pgk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 83/176 (47.16%), Postives = 118/176 (67.05%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPK-GVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDY 644
            + + +L G +VF+R D NVP+D+ LNITDD R+R+A+PTI+Y + +G  V+L+SHLGRPK G   K+SL+ +  RLS LL  EV  A D IG + +     +  G +L++EN+RF K E KND   AK+L+   + Y+NDAFG  HRAH+S E + KF   K   AGFL+ KE+++
Sbjct:    7 INDLELNGAKVFIRCDFNVPMDEFLNITDDRRIRSAIPTIRYCLDNGCSVVLASHLGRPKNGYEEKFSLQGVAKRLSRLLDREVIFAEDVIGNDAKTKAEALKAGEILMIENLRFEKGETKNDEALAKELSEFGEFYINDAFGVCHRAHSSVEAITKFYDEKHKAAGFLLQKEINF 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_XANP2 (Phosphoglycerate kinase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=pgk PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.317e-42
Identity = 89/178 (50.00%), Postives = 118/178 (66.29%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L +ADL  KRV VRVDLNVP++    +TD+ R++A +PTI+ +   G K +L +H GRPKG     SL P+   L   LG +V  A+DC+GEE    ++ +  G V++LEN RFH  EEKN P+F + LASL D+YVNDAF +AHRAHASTEG+A+ L P+ AG  M  EL  L  A+
Sbjct:    7 LDDADLADKRVLVRVDLNVPMESG-RVTDETRLKAILPTIRTITDKGGKAVLLAHFGRPKGRDESQSLAPVAKALEGQLGRKVAFASDCVGEEASSAISRLAAGEVIVLENTRFHAGEEKNAPDFVEALASLGDIYVNDAFSAAHRAHASTEGLARKL-PAYAGRSMESELAALTKAL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_RHOBA (Phosphoglycerate kinase OS=Rhodopirellula baltica GN=pgk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.250e-42
Identity = 93/190 (48.95%), Postives = 123/190 (64.74%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT--PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL--KPSVAGFLMXKELDYLVGAVS 662
            AKK++    + D++ K V +RVD NVPLD++L ITDD R+R A+P+IK ++  G KVIL SHLGRP G     KYSL P   RL ELLG  V  A D +G++     + +  G VL+LEN+RF+  E+K D EFA KLA++AD Y NDAFG+ HR  AS   V + +  KP V G L+ KE+ YL  A+S
Sbjct:    2 AKKTID---QIDVQDKTVLMRVDFNVPLDESLAITDDRRIRMALPSIKSVIDRGGKVILMSHLGRPTGGEGDEKYSLAPAAKRLGELLGSTVHFATDTVGDDASSKASSLAAGEVLVLENLRFNPGEKKGDSEFAGKLAAMADAYCNDAFGTCHRKDASMVAVPEAMAGKPRVVGHLVAKEIQYLTDAIS 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ENTFA (Phosphoglycerate kinase OS=Enterococcus faecalis GN=pgk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.250e-42
Identity = 100/191 (52.36%), Postives = 127/191 (66.49%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            AKK++   K+ DLK K+V VRVD NVPL D + IT+DNR+ AA+PTIKY++ +G K IL SHLGR K    K   SLKP+  RLSELLG  V    +  G+E+E  V  + +G VL+ EN RF     K+E  ND E  K  ASL D++VNDAFG+AHRAHAS  G+A    P+VAGFLM KE+ ++  AV
Sbjct:    2 AKKTI---KDVDLKDKKVLVRVDFNVPLKDGV-ITNDNRIVAALPTIKYVIENGGKAILFSHLGRVKTEEDKAGKSLKPVAERLSELLGQPVTFVPETRGKELEDAVNNMKDGDVLVFENTRFEDVDGKKESGNDAELGKYWASLGDVFVNDAFGTAHRAHASNVGIASTGIPTVAGFLMEKEIKFIGEAV 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BRUME (Phosphoglycerate kinase OS=Brucella melitensis GN=pgk PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 8.250e-42
Identity = 97/175 (55.43%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L +A+++ KRV VRVDLNVP+  N  +TD  R+   VPTI  L   GAKVIL +H GRPKGV + + SLK +V  LS++L   V  A DCIG++ +  V  + +G VLLLEN RFHK EEKNDPEF + LA+  DLYVNDAF +AHRAHASTEG+A  L P+ AG  M  EL+ L
Sbjct:    6 LDDANVQSKRVLVRVDLNVPMA-NGEVTDLTRIERIVPTIAELSRKGAKVILLAHFGRPKGVASDENSLKHVVKPLSKVLDHSVHFAEDCIGDKAKAAVDALKDGDVLLLENTRFHKGEEKNDPEFVQALAANGDLYVNDAFSAAHRAHASTEGLAHVL-PAFAGRAMQAELEAL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BRUAB (Phosphoglycerate kinase OS=Brucella abortus GN=pgk PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 8.250e-42
Identity = 97/175 (55.43%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L +A+++ KRV VRVDLNVP+  N  +TD  R+   VPTI  L   GAKVIL +H GRPKGV + + SLK +V  LS++L   V  A DCIG++ +  V  + +G VLLLEN RFHK EEKNDPEF + LA+  DLYVNDAF +AHRAHASTEG+A  L P+ AG  M  EL+ L
Sbjct:    6 LDDANVQSKRVLVRVDLNVPMA-NGEVTDLTRIERIVPTIAELSRKGAKVILLAHFGRPKGVASDENSLKHVVKPLSKVLDHSVHFAEDCIGDKAKAAVDALKDGDVLLLENTRFHKGEEKNDPEFVQALAANGDLYVNDAFSAAHRAHASTEGLAHVL-PAFAGRAMQAELEAL 178          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_XANFL (Phosphoglycerate kinase OS=Xanthobacter flavus GN=pgk PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.077e-41
Identity = 89/174 (51.15%), Postives = 118/174 (67.82%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            DL  KRV VRVDLNVP++    +TD  R++A +PTI+ + G G K +L +HLGRPKG     SL P+   L   LG +V  A+DCIG+E +  V+ +  G V++LEN RFH  EEKN P+F + LASL D+YVNDAF +AHRAHASTEG+A+ L P+ AG  M  E++ L  A+
Sbjct:   12 DLADKRVLVRVDLNVPMESG-RVTDATRLKAILPTIRDITGKGGKAVLLAHLGRPKGRDESQSLAPVAKALEGELGRKVAFASDCIGDEAKSAVSRLASGEVIVLENTRFHAGEEKNAPDFIEALASLGDIYVNDAFSTAHRAHASTEGLARKL-PAYAGRSMESEIEALTKAL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_BRUSU (Phosphoglycerate kinase OS=Brucella suis GN=pgk PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.077e-41
Identity = 96/175 (54.86%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L +A+++ KRV VR+DLNVP+  N  +TD  R+   VPTI  L   GAKVIL +H GRPKGV + + SLK +V  LS++L   V  A DCIG++ +  V  + +G VLLLEN RFHK EEKNDPEF + LA+  DLYVNDAF +AHRAHASTEG+A  L P+ AG  M  EL+ L
Sbjct:    5 LDDANVQSKRVLVRIDLNVPMA-NGEVTDLTRIERIVPTIAELSRKGAKVILLAHFGRPKGVASDENSLKHVVKPLSKVLDHSVHFAEDCIGDKAKAAVDALKDGDVLLLENTRFHKGEEKNDPEFVQALAANGDLYVNDAFSAAHRAHASTEGLAHVL-PAFAGRAMQAELEAL 177          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SPHWW (Phosphoglycerate kinase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=pgk PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.407e-41
Identity = 91/175 (52.00%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  138 DLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            D++GKRV VR DLNVP++    +TDD R+R+A PT+  L   GA V++ +H GRPKG   P+ SL  +      +LG EV+   DC GEE E  VA++  G + LLEN RFHK EEKNDP  A+ +A L DLYVNDAF +AHRAHASTEG+A+ L P+ AG  M  EL+ L  A+
Sbjct:   11 DVRGKRVLVREDLNVPME-GAAVTDDTRLRSAAPTVAELADKGAIVLVLAHFGRPKGERNPEMSLALVTAAFRSVLGREVRFVGDCCGEEAEAAVAQLQPGDIALLENTRFHKGEEKNDPALAQAMAKLGDLYVNDAFSAAHRAHASTEGLARLL-PAFAGRSMQAELEALEKAL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SILST (Phosphoglycerate kinase OS=Silicibacter sp. (strain TM1040) GN=pgk PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.407e-41
Identity = 90/180 (50.00%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            L + DL+GK V  RVD+NVP++D   +TDD R+R  VPTI  L+  GAK +L +H GRPKG V P+ SL+PLVP L    G  V    DC G   +  V  +  G +LLLEN RF+  EE+ND + AK++A+L D+Y NDAF +AHRAHASTE +A+ L P+ AG LM  EL  L G+++
Sbjct:    6 LDDMDLQGKSVLTRVDINVPMEDG-KVTDDTRIRRLVPTISDLLSKGAKPVLLAHFGRPKGKVVPEMSLQPLVPALEAAFGAPVMFVADCRGPAAKGAVDALAPGQILLLENTRFYPGEEQNDADLAKEMAALGDIYCNDAFSAAHRAHASTEALARLL-PACAGRLMEAELKALEGSLA 183          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CAMC13.703e-4247.16Phosphoglycerate kinase OS=Campylobacter concisus ... [more]
PGK_XANP26.317e-4250.00Phosphoglycerate kinase OS=Xanthobacter autotrophi... [more]
PGK_RHOBA8.250e-4248.95Phosphoglycerate kinase OS=Rhodopirellula baltica ... [more]
PGK_ENTFA8.250e-4252.36Phosphoglycerate kinase OS=Enterococcus faecalis G... [more]
PGK_BRUME8.250e-4255.43Phosphoglycerate kinase OS=Brucella melitensis GN=... [more]
PGK_BRUAB8.250e-4255.43Phosphoglycerate kinase OS=Brucella abortus GN=pgk... [more]
PGK_XANFL1.077e-4151.15Phosphoglycerate kinase OS=Xanthobacter flavus GN=... [more]
PGK_BRUSU1.077e-4154.86Phosphoglycerate kinase OS=Brucella suis GN=pgk PE... [more]
PGK_SPHWW1.407e-4152.00Phosphoglycerate kinase OS=Sphingomonas wittichii ... [more]
PGK_SILST1.407e-4150.00Phosphoglycerate kinase OS=Silicibacter sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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