FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STAA2 (Phosphoglycerate kinase OS=Staphylococcus aureus (strain JH1) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 92/192 (47.92%), Postives = 126/192 (65.62%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            AKK VS L   DLKGK V VR D NVPL D   IT+DNR+  A+PTI+Y++  G K++L SHLG+ K  + K   +L+P+   LS+ L  EV    +  GE++E  + ++ EG VLL+EN R+     K+E KNDPE  K  ASL D++VNDAFG+AHR HAS  G++  L+ + AGFLM KE+ ++ G V+
Sbjct:    2 AKKIVSDL---DLKGKTVLVRADFNVPLKDG-EITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLE-TAAGFLMDKEIKFIGGVVN 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STAA1 (Phosphoglycerate kinase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 92/192 (47.92%), Postives = 126/192 (65.62%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            AKK VS L   DLKGK V VR D NVPL D   IT+DNR+  A+PTI+Y++  G K++L SHLG+ K  + K   +L+P+   LS+ L  EV    +  GE++E  + ++ EG VLL+EN R+     K+E KNDPE  K  ASL D++VNDAFG+AHR HAS  G++  L+ + AGFLM KE+ ++ G V+
Sbjct:    2 AKKIVSDL---DLKGKTVLVRADFNVPLKDG-EITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLE-TAAGFLMDKEIKFIGGVVN 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_MYCMS (Phosphoglycerate kinase OS=Mycoplasma mycoides subsp. mycoides SC GN=pgk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 90/189 (47.62%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH--------KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            LK+ D+K K V VRVD NVP+ + + ITDDNR+ AA PTI YL+ + AK++L SHL R K    K   SL P+  RL ELL  +VK  N   G+E+EK ++ +    ++L+EN RF         K E KN+ E  K  ASL +++VNDAFG+AHRAHAS  G+A  +K S  GFL+ KEL  L  AV+
Sbjct:    9 LKDIDVKNKTVLVRVDFNVPIQNGV-ITDDNRIIAAFPTINYLLENDAKIVLFSHLSRIKSKEDKLKKSLAPVAKRLEELLNKQVKFINQTRGQELEKAISSLQSKEIILVENTRFEDVLDDQVVKYESKNNSELGKYWASLGEVFVNDAFGTAHRAHASNVGIASNIKVSAIGFLVEKELKMLFQAVN 196          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_HERAR (Phosphoglycerate kinase OS=Herminiimonas arsenicoxydans GN=pgk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 3
Query:   99 MAAKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            M  K+   ++   +LKGKRVF+R DLNVP D   NIT+D R+RA+VP I+  +  GA V+++SHLGRP      P  +L P+  RLSELLG  V +  D +         ++  G V+LLEN R +K E+KND   AKK+A+L D+YVNDAFG+AHRA A+T G+AK+   + AG L+  ELD L
Sbjct:    1 MQFKRLSDLIARNELKGKRVFIRADLNVPQDGKGNITEDTRIRASVPAIRQALQAGAAVMVTSHLGRPVEGEFKPADTLAPIAQRLSELLGQPVALKQDWVDG------VDVAPGQVVLLENCRVNKGEKKNDDVLAKKIAALCDVYVNDAFGTAHRAEATTHGIAKYATVACAGPLLAAELDAL 179          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DEIDV (Phosphoglycerate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=pgk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 92/176 (52.27%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG-VTPKYSLKPLVPRLSELLGVEVKMANDCIG-EEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            L   D+KGKRV VRVD NVP+ D + + DD RV A++PT+  L+G GA V+L SH GRPKG    KYSL+P+ P L ++LG  VK      G +E  + V E+  G V LLENVRF   EEKN+PE  +KLA L D +V DAFGSAHRAH+S  GVA  L P  AG L+  E++ L
Sbjct:    4 LSSLDVKGKRVLVRVDYNVPVKDGV-VQDDTRVTASLPTVNALLGAGASVVLMSHFGRPKGGPEDKYSLRPVAPVLEKVLGRPVKFIASLPGSDETLQAVQELQPGEVALLENVRFEAGEEKNNPELNQKLARLGDAFVLDAFGSAHRAHSSVSGVAAQL-PHAAGTLLQTEVEAL 177          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLAB (Phosphoglycerate kinase OS=Chlamydophila abortus GN=pgk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.902e-38
Identity = 93/179 (51.96%), Postives = 117/179 (65.36%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRP--KGVTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE--KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAK-FLKPSVAGFLMXKELDYL 647
            ++E   + K+V VRVD NVP+ D   I DD R+R+A+PTI YL+   A VIL SHLGRP  KG   KYSL+P+V  L   LG  V +A DC+GE   + VA+I  G VLLLEN+RFH  EE  +  P FA +L+S  D YVNDAFG++HR HAS   V + F   S AG LM KEL++L
Sbjct:    6 VRELSPEEKKVLVRVDFNVPIKDG-KILDDIRIRSAMPTIHYLLQKRAAVILMSHLGRPQGKGFEEKYSLQPVVEVLEGYLGHHVPLAPDCVGEVARQAVAQISPGRVLLLENLRFHPGEEHPEEHPAFAAELSSYGDFYVNDAFGTSHRKHASVYTVPQAFPGRSAAGLLMEKELEFL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STAES (Phosphoglycerate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pgk PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 93/192 (48.44%), Postives = 125/192 (65.10%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            AKK VS L   DLKGK V  R D NVP+ D   IT+DNR+  A+PTI+Y++  G K++L SHLG+ K  + K   SLKP+   LS+ LG EV    +  GE++E  +  + EG VLL+EN RF     K+E KNDPE  K  ASL D++VNDAFG+AHR HAS  G++  L+ + AG+LM KE+ ++ G V+
Sbjct:    2 AKKIVSDL---DLKGKVVLERADFNVPIKDG-EITNDNRIVQALPTIEYIIEQGGKLVLFSHLGKVKEESDKEGLSLKPVAENLSKKLGKEVIFVPETRGEKLETAIENLNEGDVLLVENTRFEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLE-TAAGYLMEKEIKFIGGVVN 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STAEQ (Phosphoglycerate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pgk PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 93/192 (48.44%), Postives = 125/192 (65.10%), Query Frame = 3
Query:  105 AKKSVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK--YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            AKK VS L   DLKGK V  R D NVP+ D   IT+DNR+  A+PTI+Y++  G K++L SHLG+ K  + K   SLKP+   LS+ LG EV    +  GE++E  +  + EG VLL+EN RF     K+E KNDPE  K  ASL D++VNDAFG+AHR HAS  G++  L+ + AG+LM KE+ ++ G V+
Sbjct:    2 AKKIVSDL---DLKGKVVLERADFNVPIKDG-EITNDNRIVQALPTIEYIIEQGGKLVLFSHLGKVKEESDKEGLSLKPVAENLSKKLGKEVIFVPETRGEKLETAIENLNEGDVLLVENTRFEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLE-TAAGYLMEKEIKFIGGVVN 188          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_SILPO (Phosphoglycerate kinase OS=Silicibacter pomeroyi GN=pgk PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 87/179 (48.60%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPK-YSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            L + DL GKRV VRVD+NVP+ D + +TD  R+R  +PTI+ ++  G + IL +H GRP G   K  SL  LVP L      +V  A+DC+G   E+    +  G VLLLEN RFH  E KNDP+ A  +A L D+Y NDAF +AHRAH+STE +A+ L PS AG LM  EL+ L  A+
Sbjct:    6 LDDMDLTGKRVLVRVDINVPIVDGV-VTDSTRIRRLMPTIRDILAAGGRPILLAHFGRPGGERRKNLSLGQLVPTLERAFETKVLFADDCVGPAAEEAAEALQPGQVLLLENTRFHASETKNDPDLAAGMARLGDIYCNDAFSAAHRAHSSTEAIARLL-PSCAGRLMQAELEALEKAL 182          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DECAR (Phosphoglycerate kinase OS=Dechloromonas aromatica (strain RCB) GN=pgk PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.484e-38
Identity = 85/184 (46.20%), Postives = 122/184 (66.30%), Query Frame = 3
Query:  114 SVSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +V  L + D+ GKRVF+R DLNVP D+  NIT+D R+RA++P+IKY +  GA V+++SHLGRP    +  + SL P+  RL ++L   V++  D +    E     +  G V+LLEN R +K E+KN+ E A+K+A L D+YVNDAFG+AHRA A+T G+AK+   + AG LM  E+D L  A+
Sbjct:    2 NVIKLTDLDVSGKRVFIRADLNVPQDEAGNITEDTRIRASLPSIKYCLEKGAAVMVTSHLGRPTEGELNHEDSLMPVAVRLGQMLHTSVRLITDWVDGGFE-----VKPGEVVLLENCRVNKGEKKNNDELAQKMAKLCDIYVNDAFGTAHRAEATTHGIAKYAPVACAGMLMGAEIDALSKAL 180          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_STAA21.902e-3847.92Phosphoglycerate kinase OS=Staphylococcus aureus (... [more]
PGK_STAA11.902e-3847.92Phosphoglycerate kinase OS=Staphylococcus aureus (... [more]
PGK_MYCMS1.902e-3847.62Phosphoglycerate kinase OS=Mycoplasma mycoides sub... [more]
PGK_HERAR1.902e-3847.57Phosphoglycerate kinase OS=Herminiimonas arsenicox... [more]
PGK_DEIDV1.902e-3852.27Phosphoglycerate kinase OS=Deinococcus deserti (st... [more]
PGK_CHLAB1.902e-3851.96Phosphoglycerate kinase OS=Chlamydophila abortus G... [more]
PGK_STAES2.484e-3848.44Phosphoglycerate kinase OS=Staphylococcus epidermi... [more]
PGK_STAEQ2.484e-3848.44Phosphoglycerate kinase OS=Staphylococcus epidermi... [more]
PGK_SILPO2.484e-3848.60Phosphoglycerate kinase OS=Silicibacter pomeroyi G... [more]
PGK_DECAR2.484e-3846.20Phosphoglycerate kinase OS=Dechloromonas aromatica... [more]

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Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
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