FC920398

Overview
NameFC920398
Unique NameFC920398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STRGC (Phosphoglycerate kinase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=pgk PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.439e-38
Identity = 91/186 (48.92%), Postives = 122/186 (65.59%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLAD-LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +K+ DLKGK+V VRVD NVP+ D + IT+DNR+ AA+PTIKY++  G + IL SHLGR K    K   SL P+   L+  LG +VK       G E+E  +  + +G VLL+EN RF     K+E KNDPE  K  ASL D ++VNDAFG+AHRAHAS  G++  ++ +VAGFL+  E+ Y+  AV
Sbjct:    6 VKDVDLKGKKVLVRVDFNVPVKDGV-ITNDNRITAALPTIKYILEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVKFIPGVTRGAELEAAINALEDGQVLLVENTRFEDVDGKKESKNDPELGKYWASLGDGIFVNDAFGTAHRAHASNVGISANVEKAVAGFLLENEIAYIQEAV 190          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_OENOB (Phosphoglycerate kinase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.439e-38
Identity = 91/191 (47.64%), Postives = 120/191 (62.83%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVT--PKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH---------KEEEKNDPEFAKKLASLAD-LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +K+ DLKGK+V +RVD NVP+ D + I +DNRV AA+PTIKY++  G K IL SHLGR K     P  SL P+   LS+LL  EV       G+E+E  + ++ +G VL++EN R+          K E  NDPE  K  A L D L+VNDAFG+AHR+HAS  G+A  +  + AGFLM KE+ YL  AV+
Sbjct:    6 VKDLDLKGKKVLMRVDFNVPIKDGV-IGNDNRVVAALPTIKYVLEQGGKAILFSHLGRIKKAEDKPGLSLAPVAKHLSDLLNQEVVFPGKTEGKELEDAIDKLKDGQVLMVENTRYEDVDANGEYVKRESGNDPELGKYWADLGDDLFVNDAFGTAHRSHASNVGIASNVSKTAAGFLMEKEIKYLDEAVN 195          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLPN (Phosphoglycerate kinase OS=Chlamydia pneumoniae GN=pgk PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.439e-38
Identity = 89/171 (52.05%), Postives = 114/171 (66.67%), Query Frame = 3
Query:  150 KRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH--KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAK-FLKPSVAGFLMXKELDYL 647
            K+V VRVD NVP+ D   I DD R+R+A+PTI YL+   A VIL SHLGRPKG     +YSL+P+V  L   LG  V +A DC+GE   + VA++  G VLLLEN+RFH  +E  + DP FA +L+S  D YVNDAFG++HR HAS   V + F   + AG LM KEL++L
Sbjct:   14 KKVLVRVDFNVPMQDG-KILDDIRIRSAMPTINYLLKKHAAVILMSHLGRPKGQGFQEEYSLQPVVDVLEGYLGHHVPLAPDCVGEVARQAVAQLSPGRVLLLENLRFHIGEEHPEKDPTFAAELSSYGDFYVNDAFGTSHRKHASVYVVPQAFPGRAAAGLLMEKELEFL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_LACDL (Phosphoglycerate kinase OS=Lactobacillus delbrueckii subsp. lactis GN=pgk PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.233e-37
Identity = 90/193 (46.63%), Postives = 121/193 (62.69%), Query Frame = 3
Query:  123 VLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKYSLK--PLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFH-------KEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFL----KPSVAGFLMXKELDYLVGAVS 662
            ++ + D+K K+V VRVD NVP+ D + I DDNR+ AA+PTIKY++ +G K IL SHLGR K    K SL   P+  RL ELL   V       G+EVE  +  + +G V++LEN RF        K E KNDP+  +  ASL D++VNDAFG+AHR+HAS  G+A  +    KP  AGFL+ KE+ +L  AV+
Sbjct:    5 IVSDVDVKDKKVLVRVDFNVPIKDGV-IGDDNRIVAALPTIKYIIENGGKAILLSHLGRIKSDEDKKSLSLAPVAKRLGELLEKPVTFVPSNEGKEVEDAINNMKDGDVVVLENTRFQDIDNDFGKRESKNDPKLGEYWASLGDVFVNDAFGTAHRSHASNVGIATAMKAAGKPVAAGFLLEKEIKFLGNAVA 196          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_DIAST (Phosphoglycerate kinase OS=Diaphorobacter sp. (strain TPSY) GN=pgk PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.233e-37
Identity = 84/179 (46.93%), Postives = 119/179 (66.48%), Query Frame = 3
Query:  132 EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +   +G+RVF+R DLNVP DD   IT+D R+RA+VP I+  +  GA V+++SHLGRP      P+ SL P+  RLSELLG EV +  D +         ++  G V+LLEN R +K E+KN+PE AKK+A L D+YVNDAFG+AHRA  +T G+A++ K + AG L+  E+D +  A++
Sbjct:   12 QGQARGQRVFIRADLNVPQDDAGRITEDTRIRASVPCIQMALEAGAAVMVTSHLGRPTEGEFKPEDSLAPVAQRLSELLGREVPLVADWVDG------VQVAPGQVVLLENCRVNKGEKKNNPELAKKMAQLCDIYVNDAFGTAHRAEGTTYGIAEYAKVACAGPLLAAEIDAIQTALA 184          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_CHLFF (Phosphoglycerate kinase OS=Chlamydophila felis (strain Fe/C-56) GN=pgk PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.233e-37
Identity = 89/171 (52.05%), Postives = 113/171 (66.08%), Query Frame = 3
Query:  150 KRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEE--KNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAK-FLKPSVAGFLMXKELDYL 647
            K+V VRVD NVP+ D   I DD R+R+A+PTI YL+   A VIL SHLGRP+G     KYSL+P+V  L   LG  V +A DCIGE   + VA++  G VL+LEN+RFH+ EE  + DP FA +L+S  D YVNDAFG++HR H S   V + F     AG LM KEL++L
Sbjct:   14 KKVLVRVDFNVPIKDG-KILDDIRIRSAMPTINYLLQKRAAVILMSHLGRPRGSGFEEKYSLQPVVEVLEGYLGHHVPLAPDCIGEVARQAVAQLSPGRVLILENLRFHRGEEHPEEDPAFAAELSSYGDFYVNDAFGTSHRKHTSVYTVPQAFPGRCAAGLLMEKELEFL 183          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_TREDE (Phosphoglycerate kinase OS=Treponema denticola GN=pgk PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 89/203 (43.84%), Postives = 129/203 (63.55%), Query Frame = 3
Query:  117 VSVLKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKG---------------------VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEE---EKNDPEF-AKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYL 647
            +  +K+ +LK KR+ +RVD NVP+ D + + DD R+RAA+PTIKY++  GA+ ++L SHLG P                       +  K+ +KP+   LS LL + V  A  C+G+ +E++ A +P+GG+L+LEN RFHKEE   EK + +  AK+L+   D+YVNDAFG+AHR+HAST  +A F+   VAGFLM KE+ YL
Sbjct:    2 IKTVKDVNLKDKRIIMRVDFNVPMKDGV-VQDDTRIRAALPTIKYILEQGARSLVLMSHLGDPSKDAKKAKEKAEKDGKPFDEEAYINGKHRMKPVAEYLSGLLKLPVDFAPSCMGQ-LERVKA-LPQGGILMLENTRFHKEETSKEKAEQQILAKELSLYGDIYVNDAFGTAHRSHASTAEIANFVNTRVAGFLMEKEIKYL 201          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_STRT2 (Phosphoglycerate kinase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=pgk PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 91/186 (48.92%), Postives = 122/186 (65.59%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKGVTPKY--SLKPLVPRLSELLGVEVKMANDCI-GEEVEKMVAEIPEGGVLLLENVRFH----KEEEKNDPEFAKKLASLAD-LYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +K+ +LKGK+V VRVD NVP+ D + IT+DNR+ AA+PTIKY++  G + IL SHLGR K    K   SL P+   L+  LG +VK       G E+E  V  + +G VLL+EN RF     K+E KNDPE  K  ASL D ++VNDAFG+AHRAHAS  G++  ++ +VAGFL+  E+ Y+  AV
Sbjct:    6 VKDVELKGKKVLVRVDFNVPVKDGV-ITNDNRITAALPTIKYILEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVKFIPGVTRGAELEAAVNSLEDGQVLLVENTRFEDVDGKKESKNDPELGKYWASLGDGIFVNDAFGTAHRAHASNVGISANVEKAVAGFLLENEIAYIQEAV 190          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_GLOMO (Phosphoglycerate kinase OS=Glomus mosseae GN=PGK PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 90/195 (46.15%), Postives = 119/195 (61.03%), Query Frame = 3
Query:  126 LKEADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAK-VILSSHLGRPKGV-TPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKND---------------PEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAV 659
            +++ ++K KRV +RVD NVPLD    IT++ R+ AA+PTIKY +   AK V+L SHLGRP G    KYSL P+   +  LLG +V    DC+GE VE  V    +G V+LLEN+RFH EEE +                 EF + L +L D+Y+NDAFG+AHRAH+S  GV   L    AGFL+ KEL+Y   A+
Sbjct:    9 IRDLNVKDKRVLIRVDFNVPLDGT-TITNNQRIVAALPTIKYALEQKAKTVVLMSHLGRPDGKKVDKYSLAPVAKEVERLLGKKVTFLEDCVGEGVENYVKNACDGEVILLENLRFHAEEEGSSKGPDGKKVKADLEKVKEFRRSLTALGDVYINDAFGTAHRAHSSMVGVE--LPQKAAGFLVKKELEYFAKAL 200          
BLAST of FC920398 vs. ExPASy Swiss-Prot
Match: PGK_ACIAC (Phosphoglycerate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 83/179 (46.37%), Postives = 119/179 (66.48%), Query Frame = 3
Query:  132 EADLKGKRVFVRVDLNVPLDDNLNITDDNRVRAAVPTIKYLMGHGAKVILSSHLGRPKG--VTPKYSLKPLVPRLSELLGVEVKMANDCIGEEVEKMVAEIPEGGVLLLENVRFHKEEEKNDPEFAKKLASLADLYVNDAFGSAHRAHASTEGVAKFLKPSVAGFLMXKELDYLVGAVS 662
            +   +G+RVF+R DLNVP DD+  IT+D R+RA+VP I+  +  GA V+++SHLGRP    +TP  SL P+  RLSELLG +V +  D +         ++  G V+LLEN R +  E+KN PE A+K+A L D+YVNDAFG+AHRA  +T G+A++ K + AG L+  E+D +  A+S
Sbjct:   12 QGQARGQRVFIRADLNVPQDDDGRITEDTRIRASVPCIRMALDAGAAVMVTSHLGRPTEGTLTPADSLAPVAARLSELLGCDVPLVADWVDG------VQVQPGQVVLLENCRVNVGEKKNTPELAQKMAKLCDIYVNDAFGTAHRAEGTTYGIAEYAKVACAGPLLSAEIDAIGKALS 184          
The following BLAST results are available for this feature:
BLAST of FC920398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_STRGC9.439e-3848.92Phosphoglycerate kinase OS=Streptococcus gordonii ... [more]
PGK_OENOB9.439e-3847.64Phosphoglycerate kinase OS=Oenococcus oeni (strain... [more]
PGK_CHLPN9.439e-3852.05Phosphoglycerate kinase OS=Chlamydia pneumoniae GN... [more]
PGK_LACDL1.233e-3746.63Phosphoglycerate kinase OS=Lactobacillus delbrueck... [more]
PGK_DIAST1.233e-3746.93Phosphoglycerate kinase OS=Diaphorobacter sp. (str... [more]
PGK_CHLFF1.233e-3752.05Phosphoglycerate kinase OS=Chlamydophila felis (st... [more]
PGK_TREDE1.610e-3743.84Phosphoglycerate kinase OS=Treponema denticola GN=... [more]
PGK_STRT21.610e-3748.92Phosphoglycerate kinase OS=Streptococcus thermophi... [more]
PGK_GLOMO1.610e-3746.15Phosphoglycerate kinase OS=Glomus mosseae GN=PGK P... [more]
PGK_ACIAC1.610e-3746.37Phosphoglycerate kinase OS=Acidovorax avenae subsp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007G09EF RVDevelop1 Citrus clementina cDNA clone C32007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920398 ID=FC920398; Name=FC920398; organism=Citrus clementina; type=EST; length=663bp
GATTTTCTCACTTAGCGTTCACCAATCTTCGATCTCATTCCAAAATCTAA
CCAAAACCCCTTCTCGATTTCTCCGATCTCGTGTTTGATCGAATCAAAAT
GGCCGCCAAGAAGAGTGTAAGCGTTCTAAAAGAAGCTGATTTGAAGGGAA
AGAGAGTGTTCGTACGAGTGGATCTGAACGTGCCGTTGGATGACAACTTG
AATATCACCGATGACAACAGAGTCCGTGCTGCTGTTCCCACTATCAAATA
CCTGATGGGTCATGGCGCCAAAGTCATTCTCTCCAGTCACTTGGGGCGTC
CAAAGGGTGTTACACCCAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTT
TCTGAACTTCTTGGAGTTGAGGTTAAAATGGCAAACGACTGCATTGGTGA
AGAAGTTGAAAAAATGGTGGCTGAAATTCCCGAAGGGGGCGTCTTGCTCC
TCGAAAATGTGAGGTTCCATAAGGAGGAAGAGAAGAATGACCCAGAGTTT
GCTAAGAAGCTAGCTTCTCTTGCAGATCTCTATGTTAATGATGCATTCGG
ATCTGCCCATAGAGCCCATGCTTCCACTGAGGGTGTGGCTAAGTTCTTGA
AGCCTTCTGTGGCTGGTTTCCTTATGNCAAAGGAACTAGATTATCTTGTT
GGAGCTGTTTCAA
back to top