FC920404

Overview
NameFC920404
Unique NameFC920404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 76/233 (32.62%), Postives = 113/233 (48.50%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR--LPVGLAGEVRRAVSC-------GKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPVPSF 666
            V L G C E     LVYEYLPNGSL   LF +  +  L W  R  I   +A GL +LH     +IVH D+K  NILLDS+L  K+ DFG+ +L  +        H ST   G+  Y  PEY   G LT K+D Y+FG++ L+L++GR      L  E R  +         G+   ++D    ++     +R++ + L C +     RP ++  +      + V++    P +
Sbjct:  750 VKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKTLH-LDWSTRYEICLGVARGLVYLHEEARLRIVHRDVKASNILLDSKLVPKVSDFGLAKLYDD-----KKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGRPNSDENLEDEKRYLLEWAWNLHEKGREVELIDHQLTEFNMEEGKRMIGIALLCTQTSHALRPPMSRVVAMLSGDVEVSDVTSKPGY 976          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 88/261 (33.72%), Postives = 122/261 (46.74%), Query Frame = 1
Query:    1 VTLLGACPEAWS-LVYEYLPNGSLQDRLF---RKSNVSPLL-WKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSI--LDPLAGDWPTFVARRLVDLGLQCCELYGRERPDI-TPSLVKELEQLHV---------------------AEERPVPSFFLCPILQEIM 696
            V + G C +    L++EY+ NG+L+D LF   RKS  S +L W DR RIA ++ SGL FLHS KP+ IVHG L P  ILLD  L  KI  FG         L + S    T P                     D  +FG+++L LLTGR   GL     +A+S  + S +  LD  AG WP  +A+    L ++C  +      D  T  +++EL ++                        +   +PS F+CPILQE+M
Sbjct:  476 VAIAGFCSQRPKCLLFEYMHNGNLRDNLFTSQRKSRRSKILKWHDRIRIAHQVCSGLGFLHSVKPKPIVHGRLTPSKILLDRNLVPKITGFG---------LIMHSDQSDTKP---------------------DVMAFGVLLLHLLTGRNWHGLL----KAMSMNQTSILRDLDQTAGKWPLELAKEFGALAVKCSSVNRGGNMDFSTKEIMEELGKIREKADEFKTKGGYEEATNSNMDEGDPNDIPSVFMCPILQEVM 702          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 60/152 (39.47%), Postives = 87/152 (57.24%), Query Frame = 1
Query:    1 VTLLGACP--EAWSLVYEYLPNGSLQDRLFR--KSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV 444
            V LLG C   +   L+YEY+PNGSL D L    K+  +   W    +IA  +A G+C+LH      IVH DLKP NILLD++  +++ DFG+ +L+  D          +   GS+ Y  PEY  T  +  KSD YS+G+I+L+++TG+  V
Sbjct:  782 VRLLGCCTNRDCTMLLYEYMPNGSLDDLLHGGDKTMTAAAEWTALYQIAIGVAQGICYLHHDCDPVIVHRDLKPSNILLDADFEARVADFGVAKLIQTD-------ESMSVVAGSYGYIAPEYAYTLQVDKKSDIYSYGVILLEIITGKRSV 926          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 63/148 (42.57%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLF-RKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR 435
            V L+G C E     LVYEY+P GSL+D L    S   PL W  R +IAA  A GL +LH      +++ DLK  NILL  +   K+ DFG+ ++           H ST   G++ Y  P+Y  TG LT KSD YSFG+++L+L+TGR
Sbjct:  161 VKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHDRMTPPVIYRDLKCSNILLGEDYQPKLSDFGLAKVGPSGD----KTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGR 304          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: CRK1_ARATH (Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 75/211 (35.55%), Postives = 104/211 (49.29%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRL-------PVGLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDIT 603
            V LLG   E     LVYEY+ N SL   LF K+ V  L WK R  I   I+ GL +LH     KI+H D+K  NILLD  LS KI DFG+ R +  D         +T   G+  Y  PEY   G LT K+D Y+FG++I++++TG+           +   V        L   +DP L G +    A +++ +GL C +     RP ++
Sbjct:  375 VRLLGCSIEGPKSLLVYEYVHNRSLDQILFMKNTVHILSWKQRFNIIIGISEGLEYLHRGSEVKIIHRDIKTSNILLDRNLSPKIADFGLIRSMGTD-----KTQTNTGIAGTLGYLAPEYLIKGQLTEKADVYAFGVLIIEIVTGKKNNAFTQGTSSVLYSVWEHFKANTLDRSIDPRLKGSFVEEEALKVLQIGLLCVQSSVELRPSMS 580          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: ANX2_ARATH (Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 75/210 (35.71%), Postives = 107/210 (50.95%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR--LPVGLAGEVRR----AVSC---GKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERP 594
            V+L+G C E     L+Y+Y+  G+L++ L+       L WK R  IA   A GL +LH+     I+H D+K  NILLD    +K+ DFG+ +        +   H +T  KGSF Y DPEY R   LT KSD YSFG+++ ++L  R  L   L+ E       A++C   G L  I+DP L G       ++  D   +C    G +RP
Sbjct:  578 VSLIGYCDEGGEMCLIYDYMSLGTLREHLYNTKRPQ-LTWKRRLEIAIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPN----MNGGHVTTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLSKEQVSLGDWAMNCKRKGTLEDIIDPNLKGKINPECLKKFADTAEKCLSDSGLDRP 782          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 75/233 (32.19%), Postives = 111/233 (47.64%), Query Frame = 1
Query:   37 LVYEYLPNGSLQDRLFRKSNVS--PLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGL--------------------AGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELE---QLHVAEERPVP 660
            LVY+Y+ NG+L D LF +   +  PL W  R  I  ++A GL +LH      I H D+K  NILLD ++ +++ DFG+ +   E        H +T   G+  Y  PEY   G LT KSD YSFG++IL+++ GR  + L                    AG+   A+    L      L+   P  +  R + +G+ C  +    RP I  +L K LE   ++    +RPVP
Sbjct:  370 LVYDYMSNGNLDDHLFPRGETTKMPLSWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKGTNILLDVDMRARVADFGLAKQSREG-----ESHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVILEIMCGRKALDLSTSGSPNTFLITDWAWSLVKAGKTEEALEQSLLREEGSGLSN--PKGIMERFLQVGILCAHVLVALRPTILDAL-KMLEGDIEVPPIPDRPVP 594          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 64/147 (43.54%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR 435
            V L G C E     LVYEYLPNGSL   LF    +  L W  R  I   +A GL +LH     +IVH D+K  NILLDS L  +I DFG+ +L  +        H ST   G+  Y  PEY   G LT K+D Y+FG++ L+L++GR
Sbjct:  751 VKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLH-LDWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLDSRLVPQISDFGLAKLYDD-----KKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGR 891          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   37 LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV 444
            L Y+Y+ NGSL D L        L W+ R +IA   A GL +LH     +I+H D+K  NILLD    +++ DFGI + +     Y      ST   G+  Y DPEY RT  L  KSD YSFG+++L+LLTG+  V
Sbjct:  722 LFYDYMENGSLWDLLHGPGKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDGNFEARLSDFGIAKSIPATKTY-----ASTYVLGTIGYIDPEYARTSRLNEKSDIYSFGIVLLELLTGKKAV 852          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 69/215 (32.09%), Postives = 107/215 (49.77%), Query Frame = 1
Query:   37 LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV-SCGKLSSILDPLAGDWPTFV-----ARRLVDLGLQCCELYGRERP---DITPSLVKELEQLHVAEERP 654
            L Y+Y+ NGSL D L        L W+ R +IA   A GL +LH     +I+H D+K  NILLD    + + DFGI + +          H ST   G+  Y DPEY RT  +  KSD YSFG+++L+LLTG+  V     + + + S    +++++ +  +           R+   L L C +    ERP   +++  L+  +  L VA++ P
Sbjct:  719 LFYDYMENGSLWDLLHGSLKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDENFEAHLSDFGIAKSIPAS-----KTHASTYVLGTIGYIDPEYARTSRINEKSDIYSFGIVLLELLTGKKAVDNEANLHQLILSKADDNTVMEAVDPEVTVTCMDLGHIRKTFQLALLCTKRNPLERPTMLEVSRVLLSLVPSLQVAKKLP 928          
The following BLAST results are available for this feature:
BLAST of FC920404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
Y5614_ARATH2.531e-2332.62Probable LRR receptor-like serine/threonine-protei... [more]
PUB50_ARATH2.531e-2333.72Putative U-box domain-containing protein 50 OS=Ara... [more]
Y5148_ARATH3.306e-2339.47Probable leucine-rich repeat receptor-like protein... [more]
RLCK7_ARATH4.318e-2342.57Probable serine/threonine-protein kinase RLCKVII O... [more]
CRK1_ARATH4.318e-2335.55Cysteine-rich receptor-like protein kinase 1 OS=Ar... [more]
ANX2_ARATH4.318e-2335.71Receptor-like protein kinase ANXUR2 OS=Arabidopsis... [more]
Y1105_ARATH5.639e-2332.19Probable receptor-like protein kinase At1g11050 OS... [more]
Y1561_ARATH1.256e-2243.54Probable LRR receptor-like serine/threonine-protei... [more]
ERL2_ARATH1.256e-2241.91LRR receptor-like serine/threonine-protein kinase ... [more]
ERL1_ARATH1.256e-2232.09LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC32007H03EF RVDevelop1 Citrus clementina cDNA clone C32007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920404 ID=FC920404; Name=FC920404; organism=Citrus clementina; type=EST; length=700bp
GTGACTCTGCTTGGCGCATGCCCAGAAGCCTGGTCCCTTGTATATGAGTA
TTTGCCCAATGGTAGTCTCCAAGACCGTCTTTTCCGTAAAAGCAACGTTT
CTCCCTTGTTATGGAAGGATCGAGCTCGGATTGCAGCTGAAATAGCTAGC
GGCCTTTGCTTTTTGCACTCATCCAAACCTGAAAAGATTGTCCATGGTGA
TTTGAAACCACAAAACATTCTTCTAGACTCTGAACTCAGCAGCAAGATAT
GCGATTTTGGCATCTGCCGGCTGGTAACCGAGGACACCCTTTATTTGCCC
AGTTTTCATCGGAGCACTGCGCCAAAGGGTTCTTTTCCATATGCAGATCC
AGAGTACCACAGGACTGGAGTCCTAACTCCCAAGTCCGACAGTTACTCCT
TTGGGTTGATAATCCTACAGCTACTTACTGGAAGGCTGCCAGTTGGGTTA
GCAGGTGAAGTGCGAAGAGCTGTGTCATGCGGGAAGTTATCATCCATCTT
GGATCCATTAGCTGGAGATTGGCCTACGTTTGTTGCAAGGCGTTTAGTGG
ACCTGGGATTGCAATGCTGTGAATTGTACGGTAGGGAGCGACCCGATATC
ACACCATCTCTGGTAAAGGAATTGGAACAGCTGCATGTTGCAGAGGAACG
ACCAGTTCCATCATTCTTTTTGTGCCCCATTCTTCAGGAAATAATGCATG
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