FC920404

Overview
NameFC920404
Unique NameFC920404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig398 contig Ccv1_Contig398:366..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAK5_ARATH (Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 80/225 (35.56%), Postives = 118/225 (52.44%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV---------GLAGEVRRAVSCGKLSSILD-PLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHV 639
            V LLG C   E   LVYE++ +G+L D L      S L W+ R RIA E+A  L +LHS     I+H D+K  NILLD  L++K+ DFG  RL+  D   L     +T  +G+  Y DPEY+ TG+L  KSD YSFG+++++LL+G   +          L      A+   +L  I+D  +  ++     +    + ++C  + G ERP +   +  ELE L V
Sbjct:  465 VKLLGCCLETEVPLLVYEFISSGTLFDHLHGSMFDSSLTWEHRLRIAIEVAGTLAYLHSYASIPIIHRDVKTANILLDENLTAKVADFGASRLIPMDQEQL-----TTMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGEKALCFERPQSSKHLVSYFVSAMKENRLHEIIDGQVMNEYNQREIQESARIAVECTRIMGEERPSM-KEVAAELEALRV 683          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 80/212 (37.74%), Postives = 113/212 (53.30%), Query Frame = 1
Query:    1 VTLLGACPE--AWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR------LP---VGLAGEVRRAVSCGKLSSILD-PLAGDWPTFVARRLVDLGLQCCELYGRERPDI 600
            V+L+G C E     L+YEY+ NG+++  L+  S +  L WK R  I    A GL +LH+   + ++H D+K  NILLD    +K+ DFG+ +   E    L   H STA KGSF Y DPEY R   LT KSD YSFG+++ ++L  R      LP   V LA    +    G+L  I+D  L G+      R+  + G +C   YG +RP +
Sbjct:  542 VSLIGYCDENNEMILIYEYMENGTVKSHLYG-SGLPSLTWKQRLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPE----LDQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLDQIIDQSLRGNIRPDSLRKFAETGEKCLADYGVDRPSM 748          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 81/212 (38.21%), Postives = 112/212 (52.83%), Query Frame = 1
Query:    1 VTLLGACPE--AWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTG---------RLPVGLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDI 600
            V+L+G C E     LVYEY+ NG+L+  L+    +S L WK R  I    A GL +LH+   + ++H D+K  NILLD  L +K+ DFG+ +   E    +   H STA KGSF Y DPEY R   LT KSD YSFG+++ ++L           R  V LA    +    G+L  I+DP L G       R+  + G +C   YG +RP +
Sbjct:  539 VSLIGYCDENNEMILVYEYMENGTLKSHLYGSGLLS-LSWKQRLEICIGSARGLHYLHTGDAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPE----IDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVMFEVLCARPVIDPTLTREMVNLAEWAMKWQKKGQLEHIIDPSLRGKIRPDSLRKFGETGEKCLADYGVDRPSM 745          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 79/210 (37.62%), Postives = 110/210 (52.38%), Query Frame = 1
Query:    1 VTLLGACPE--AWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR------LP---VGLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERP 594
            V+L+G C E     +VYEY+  G+L+D L+   +   L W+ R  I    A GL +LH+     I+H D+K  NILLD    +K+ DFG+ +   +    L   H STA KGSF Y DPEY     LT KSD YSFG+++L+++ GR      LP   V L     + V  GKL  I+DP L G       ++  ++  +C    G ERP
Sbjct:  544 VSLIGYCDENSEMIIVYEYMEKGTLKDHLYDLDDKPRLSWRQRLEICVGAARGLHYLHTGSTRAIIHRDVKSANILLDDNFMAKVADFGLSKTGPD----LDQTHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPSLPREKVNLIEWAMKLVKKGKLEDIIDPFLVGKVKLEEVKKYCEVTEKCLSQNGIERP 749          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 83/223 (37.22%), Postives = 115/223 (51.57%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV---------GLAGEVRRAVSCGKLSSILDPLAGDWPTF-VARRLVDLGLQCCELYGRERPDITPSLVKELEQL 633
            V LLG C   E   LVYE++PNG L  RL  +S+   + W+ R  IA EIA  L +LHS+    I H D+K  NILLD    +K+ DFG  R VT D       H +T   G+F Y DPEY ++   T KSD YSFG+++++LLTG  P          GLA     AV   ++  I+D    D         + +L  +C    G++RP++    + ELE +
Sbjct:  473 VKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDYTMTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLDERNRAKVSDFGTSRSVTID-----QTHLTTQVAGTFGYVDPEYFQSSKFTEKSDVYSFGVVLVELLTGEKPSSRVRSEENRGLAAHFVEAVKENRVLDIVDDRIKDECNMDQVMSVANLARRCLNRKGKKRPNMREVSI-ELEMI 689          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 78/227 (34.36%), Postives = 121/227 (53.30%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE-------VRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEER 651
            V L+G C E    +L+YEY+ NG L++ +  K   S L W+ R +I  E A GL +LH+     +VH D+K  NILL+  L +K+ DFG+ R    +       H ST   G+  Y DPEY+RT  L  KSD YSFG+++L+++T +L +  + E       V   ++ G + +I+DP L GD+ +    R V+L + C       RP ++  +++  E L     R
Sbjct:  649 VGLVGYCDEGENLALIYEYMANGDLREHMSGKRGGSILNWETRLKIVVESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHLHAKLADFGLSRSFPIE----GETHVSTVVAGTPGYLDPEYYRTNWLNEKSDVYSFGIVLLEIITNQLVINQSREKPHIAEWVGLMLTKGDIQNIMDPKLYGDYDSGSVWRAVELAMSCLNPSSARRPTMSQVVIELNECLSYENAR 871          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 77/228 (33.77%), Postives = 123/228 (53.95%), Query Frame = 1
Query:    1 VTLLGACPE--AWSLVYEYLPNGSLQDRLFRKSNVSPLL-WKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV---------GLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAE 645
            V LLG C E     LVY ++ NGSL DRL+ +++   +L W  R  IA   A GL +LH+     ++H D+K  NILLD  + +K+ DFG  +   ++       + S   +G+  Y DPEY++T  L+ KSD +SFG+++L++++GR P+          L    +  +   K+  I+DP + G +      R+V++ LQC E Y   RP +   +V+ELE   + E
Sbjct:  653 VPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQE----GDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMV-DIVRELEDALIIE 875          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 76/208 (36.54%), Postives = 115/208 (55.29%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE-------VRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERP 594
            V L+G C +    +L+YEY+ NG L++ +  K   + L W++R +IA E A GL +LH+     +VH D+K  NILL+    +K+ DFG+ R    D       H ST   G+  Y DPEY+RT  L+ KSD YSFG+++L+++T +  +    E       V   ++ G + SI+DP L GD+ T  A ++V+L L C       RP
Sbjct:  640 VGLVGYCDDGDNLALIYEYMANGDLRENMSGKRGGNVLTWENRMQIAVEAAQGLEYLHNGCRPPMVHRDVKTTNILLNERCGAKLADFGLSRSFPID----GECHVSTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTNQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKLMGDYDTNGAWKIVELALACVNPSSNRRP 843          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y2899_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 78/225 (34.67%), Postives = 123/225 (54.67%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE-------VRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAE 645
            V+L+G C E    +L+YEY+PNG L+  L  K     L W+ R +I  + A GL +LH+     +VH D+K  NILLD  L +K+ DFG+ R            + ST   G+  Y DPEY++T  LT KSD YSFG+++L++++ R  +  + E       V   ++ G L SI+DP L  D+      + ++L + C  L    RP+++  +V EL++  ++E
Sbjct:  634 VSLVGYCDEGEHLALIYEYMPNGDLKQHLSGKHGGFVLSWESRLKIVLDAALGLEYLHTGCVPPMVHRDIKTTNILLDQHLQAKLADFGLSRSFPIGN----EKNVSTVVAGTPGYLDPEYYQTNWLTEKSDIYSFGIVLLEIISNRPIIQQSREKPHIVEWVSFMITKGDLRSIMDPNLHQDYDIGSVWKAIELAMSCVSLSSARRPNMS-RVVNELKECLISE 853          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 80/223 (35.87%), Postives = 121/223 (54.26%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRL--VTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV--------GLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQ 630
            V+L+G C E    +L+YEY PNG L+  L  +   SPL W  R +I  E A GL +LH+     +VH D+K  NILLD    +K+ DFG+ R   V  +T      H STA  G+  Y DPEY+RT  L  KSD YSFG+++L+++T R PV         +A  V   ++ G + +++DP L  D+      + +++ + C      +RP ++  +  EL+Q
Sbjct:  630 VSLVGYCDEESNLALLYEYAPNGDLKQHLSGERGGSPLKWSSRLKIVVETAQGLEYLHTGCKPPMVHRDVKTTNILLDEHFQAKLADFGLSRSFPVGGET------HVSTAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSR-PVIQQTREKPHIAAWVGYMLTKGDIENVVDPRLNRDYEPTSVWKALEIAMSCVNPSSEKRPTMS-QVTNELKQ 844          
The following BLAST results are available for this feature:
BLAST of FC920404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
WAK5_ARATH5.822e-2835.56Wall-associated receptor kinase 5 OS=Arabidopsis t... [more]
HERK_ARATH5.822e-2837.74Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
Y5597_ARATH7.604e-2838.21Probable receptor-like protein kinase At5g59700 OS... [more]
Y2393_ARATH7.604e-2837.62Probable receptor-like protein kinase At2g39360 OS... [more]
WAKLB_ARATH7.604e-2837.22Wall-associated receptor kinase-like 2 OS=Arabidop... [more]
RLK6_ARATH7.604e-2834.36Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
NORK_MEDTR7.604e-2833.77Nodulation receptor kinase OS=Medicago truncatula ... [more]
Y1518_ARATH9.931e-2836.54Probable LRR receptor-like serine/threonine-protei... [more]
Y2899_ARATH1.297e-2734.67Probable leucine-rich repeat receptor-like protein... [more]
Y2289_ARATH1.297e-2735.87Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC32007H03EF RVDevelop1 Citrus clementina cDNA clone C32007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920404 ID=FC920404; Name=FC920404; organism=Citrus clementina; type=EST; length=700bp
GTGACTCTGCTTGGCGCATGCCCAGAAGCCTGGTCCCTTGTATATGAGTA
TTTGCCCAATGGTAGTCTCCAAGACCGTCTTTTCCGTAAAAGCAACGTTT
CTCCCTTGTTATGGAAGGATCGAGCTCGGATTGCAGCTGAAATAGCTAGC
GGCCTTTGCTTTTTGCACTCATCCAAACCTGAAAAGATTGTCCATGGTGA
TTTGAAACCACAAAACATTCTTCTAGACTCTGAACTCAGCAGCAAGATAT
GCGATTTTGGCATCTGCCGGCTGGTAACCGAGGACACCCTTTATTTGCCC
AGTTTTCATCGGAGCACTGCGCCAAAGGGTTCTTTTCCATATGCAGATCC
AGAGTACCACAGGACTGGAGTCCTAACTCCCAAGTCCGACAGTTACTCCT
TTGGGTTGATAATCCTACAGCTACTTACTGGAAGGCTGCCAGTTGGGTTA
GCAGGTGAAGTGCGAAGAGCTGTGTCATGCGGGAAGTTATCATCCATCTT
GGATCCATTAGCTGGAGATTGGCCTACGTTTGTTGCAAGGCGTTTAGTGG
ACCTGGGATTGCAATGCTGTGAATTGTACGGTAGGGAGCGACCCGATATC
ACACCATCTCTGGTAAAGGAATTGGAACAGCTGCATGTTGCAGAGGAACG
ACCAGTTCCATCATTCTTTTTGTGCCCCATTCTTCAGGAAATAATGCATG
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