FC920404

Overview
NameFC920404
Unique NameFC920404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig398 contig Ccv1_Contig398:366..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 82/213 (38.50%), Postives = 118/213 (55.40%), Query Frame = 1
Query:    1 VTLLGACPE--AWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPE-KIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR------LP---VGLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDI 600
            V+L G C E     LVYE++  G+L++ L+  SN+  L WK R  I    A GL +LHSS  E  I+H D+K  NILLD    +K+ DFG+ ++  +D   +     S   KG+F Y DPEY +T  LT KSD Y+FG+++L++L  R      LP   V L+  V    S G +  ILDP L G   T   ++ +++  +C + YG ERP +
Sbjct:  545 VSLTGYCEENSEMILVYEFMEKGTLKEHLYG-SNLPSLTWKQRLEICIGAARGLDYLHSSGSEGAIIHRDVKSTNILLDEHNIAKVADFGLSKIHNQDESNI-----SINIKGTFGYLDPEYLQTHKLTEKSDVYAFGVVLLEVLFARPAIDPYLPHEEVNLSEWVMFCKSKGTIDEILDPSLIGQIETNSLKKFMEIAEKCLKEYGDERPSM 751          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 69/183 (37.70%), Postives = 104/183 (56.83%), Query Frame = 1
Query:    1 VTLLGACP--EAWSLVYEYLPNGSLQDRLFRKSNVS--PLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE---------VRRAVSCGKLSSILDPL 510
            V LLG C   E   L+YE++PNG+L + L   S+ +  PL W+ R +IA + A GL +LHS+    I H D+K  NILLD +L++K+ DFG+ RLV          H  T  +G+  Y DPEY+R   LT KSD YSFG+++L+++T +  +    E         + + +   +L+  +DPL
Sbjct:  420 VRLLGCCVDLELPLLIYEFIPNGTLFEHLHGSSDRTWKPLTWRRRLQIAYQTAEGLAYLHSAAQPPIYHRDVKSSNILLDEKLNAKVSDFGLSRLVDLTETANNESHIFTGAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLLEMVTSKKAIDFTREEEDVNLVMYINKMMDQERLTECIDPL 602          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAKLN_ARATH (Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 82/230 (35.65%), Postives = 121/230 (52.61%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRK-SNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLP----------VGLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEE 648
            V LLG C   E   LVYE++ NG+L   +  + S+   +LW  R RIA +IA  L +LHSS    I H D+K  NILLD +  +K+ DFG  R VT D       H +T   G+  Y DPEY+++   T KSD YSFG+I+ +L+TG  P          V LA   R A+   +L+ I+D  +  D        +  + ++C    G++RP++   +  ELE++  + E
Sbjct:  510 VKLLGCCLETEVPMLVYEFIINGNLFKHIHEEESDDYTMLWGMRLRIAVDIAGALSYLHSSASSPIYHRDIKSTNILLDEKYRAKVADFGTSRSVTID-----QTHWTTVISGTVGYVDPEYYQSSQYTEKSDVYSFGVILAELITGDKPVIMVQNTQEIVALAEHFRVAMKEKRLTDIIDARIRNDCKPEQVMAVAKVAMKCLSSKGKKRPNMR-EVFTELERICTSPE 733          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 87/225 (38.67%), Postives = 122/225 (54.22%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRL-VTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGR--LPVGLAGEVRRAVSCG--------KLSSILD-PLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 633
            V L+G C E  +  LVYE++P GSL++ LFR+    PL W  R ++A   A GL FLH +K + +++ D K  NILLD++ ++K+ DFG+ +   T D       H ST   G+  YA PEY  TG LT KSD YSFG+++L+L++GR  +     G     V           KL  I+D  L G +P   A    +L LQC     + RP ++  LV  LEQL
Sbjct:  153 VLLVGYCAEGENRLLVYEFMPKGSLENHLFRRG-AQPLTWAIRMKVAVGAAKGLTFLHEAKSQ-VIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDNT-----HVSTKVIGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRAMDNSNGGNEYSLVDWATPYLGDKRKLFRIMDTKLGGQYPQKGAFTAANLALQCLNPDAKLRPKMSEVLV-TLEQL 369          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAKLR_ARATH (Wall-associated receptor kinase-like 21 OS=Arabidopsis thaliana GN=WAKL21 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 82/228 (35.96%), Postives = 119/228 (52.19%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRL-VTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTG---------RLPVGLAGEVRRAVSCGKLSSILDPLAGDW--PTFVA--RRLVDLGLQCCELYGRERPDITPSLVKELEQLH 636
            V LLG C       LVYE++PNG+L   L  +    PL W+ R  IA + A+ +  LHSS    I H D+K  NILLD E +SKI DFG+ RL ++ D     + H STAP+G+  Y DP+YH+   L+ KSD YSFG++++++++G            V LA      +  G++  I+DP       P   A    L +L  +C   +   R    P++V+  E LH
Sbjct:  369 VRLLGCCFADGEPFLVYEFMPNGTLYQHLQHERGQPPLSWQLRLAIACQTANAIAHLHSSVNPPIYHRDIKSSNILLDHEFNSKISDFGLSRLGMSTD---FEASHISTAPQGTPGYLDPQYHQDFQLSDKSDVYSFGVVLVEIISGFKVIDFTRPYSEVNLASLAVDRIGRGRVVDIIDPCLNKEINPKMFASIHNLAELAFRCLSFHRNMR----PTMVEITEDLH 589          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAKLC_ARATH (Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 80/217 (36.87%), Postives = 110/217 (50.69%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLP---------VGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVK 618
            V LLG C   E   LVYEY+PNG L  RL  + +   + W+ R RIA EIA  L ++HS+    I H D+K  NILLD +  +KI DFG  R V  D       H +T   G+F Y DPEY  +   T KSD YSFG+++++L+TG  P         +GLA     A+   +   I+D    D    V   +  L  +C    G +RP++    +K
Sbjct:  485 VKLLGCCLETEVPILVYEYIPNGDLFKRLHDEYDDYMMTWEVRLRIAVEIAGALSYMHSAASFPIFHRDIKTTNILLDEKYRAKISDFGTSRSVATD-----QTHLTTLVAGTFGYMDPEYFLSSQYTHKSDVYSFGVVLVELITGEKPMSRVRSEEGIGLATYFLEAMKENRAVDIIDIRIKDESKQV-MAVAKLARRCLNRKGNKRPNMREVSIK 695          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAK1_ARATH (Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 80/229 (34.93%), Postives = 117/229 (51.09%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV---------GLAGEVRRAVSCGKLSSIL-DPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEER 651
            V LLG C   E   LVYE++ NG+L D L      S L W+ R +IA E+A  L +LHSS    I+H D+K  NILLD  L++K+ DFG  RL+  D   L      T  +G+  Y DPEY+ TG+L  KSD YSFG+++++LL+G+  +          L      A    +L  I+   +  +      +    +  +C  L G ERP +   +  +LE L V + +
Sbjct:  466 VKLLGCCLETEVPLLVYEFITNGTLFDHLHGSMIDSSLTWEHRLKIAIEVAGTLAYLHSSASIPIIHRDIKTANILLDVNLTAKVADFGASRLIPMDKEEL-----ETMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFKRPQSSKHLVSYFATATKENRLDEIIGGEVMNEDNLKEIQEAARIAAECTRLMGEERPRM-KEVAAKLEALRVEKTK 688          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 79/225 (35.11%), Postives = 127/225 (56.44%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVG-------LAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAE 645
            V+L+G C E    +L+Y+Y+ NG L+      S +S   W DR  IA + ASGL +LH      IVH D+K  NILLD +L +K+ DFG+ R            H ST   G+F Y D EY++T  L+ KSD YSFG+++L+++T +  +        +A  V+  ++ G +S+I+DP L G + +  A + ++L + C      +RP+++  +V EL++  V+E
Sbjct:  627 VSLVGYCDEKDHLALIYQYMVNGDLKKHFSGSSIIS---WVDRLNIAVDAASGLEYLHIGCKPLIVHRDVKSSNILLDDQLQAKLADFGLSRSFPIG----DESHVSTLVAGTFGYLDHEYYQTNRLSEKSDVYSFGVVLLEIITNKPVIDHNRDMPHIAEWVKLMLTRGDISNIMDPKLQGVYDSGSAWKALELAMTCVNPSSLKRPNMS-HVVHELKECLVSE 843          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: MEE39_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MEE39 OS=Arabidopsis thaliana GN=MEE39 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 79/223 (35.43%), Postives = 118/223 (52.91%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICR--LVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV-------GLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 633
            V L+G C E   ++L+YEY+ NG L   L  K   S L W  R +IA E A GL +LH+     +VH D+K  NILLD E  +KI DFG+ R   V  D   +     ST   G+  Y DPEY+ T  L+ KSD YSFG+++L+++T +  +        +A  V   +  G  S I+DP L G++ T    R +++ + C      +RP+++  ++   E L
Sbjct:  623 VNLVGYCDEQDHFALIYEYMSNGDLHQHLSGKHGGSVLNWGTRLQIAIEAALGLEYLHTGCKPAMVHRDVKSTNILLDEEFKAKIADFGLSRSFQVGGDQSQV-----STVVAGTLGYLDPEYYLTSELSEKSDVYSFGILLLEIITNQRVIDQTRENPNIAEWVTFVIKKGDTSQIVDPKLHGNYDTHSVWRALEVAMSCANPSSVKRPNMSQVIINLKECL 840          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: CRK40_ARATH (Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSC-----GKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLV 615
            V LLG C E     LVYE++PN SL   +F +   S L W+ R RI   IA GL +LH     KI+H DLK  NILLD+E++ K+ DFG  RL   D     +  R    +G   Y  PEY   G ++ KSD YSFG+++L++++G       GE   A +      GK   I+DP   + P     +L+ +GL C +    +RP ++  ++
Sbjct:  405 VKLLGFCNEGDEEILVYEFVPNSSLDHFIFDEDKRSLLTWEVRFRIIEGIARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFDSDETRAET-KRIAGTRG---YMAPEYLNHGQISAKSDVYSFGVMLLEMISGERNNSFEGEGLAAFAWKRWVEGKPEIIIDPFLIENPRNEIIKLIQIGLLCVQENSTKRPTMSSVII 612          
The following BLAST results are available for this feature:
BLAST of FC920404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
Y2232_ARATH4.929e-2738.50Probable receptor-like protein kinase At2g23200 OS... [more]
WAKLQ_ARATH4.929e-2737.70Wall-associated receptor kinase-like 20 OS=Arabido... [more]
WAKLN_ARATH4.929e-2735.65Wall-associated receptor kinase-like 18 OS=Arabido... [more]
APK2A_ARATH4.929e-2738.67Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
WAKLR_ARATH6.437e-2735.96Wall-associated receptor kinase-like 21 OS=Arabido... [more]
WAKLC_ARATH6.437e-2736.87Wall-associated receptor kinase-like 3 OS=Arabidop... [more]
WAK1_ARATH6.437e-2734.93Wall-associated receptor kinase 1 OS=Arabidopsis t... [more]
Y1756_ARATH8.407e-2735.11Probable LRR receptor-like serine/threonine-protei... [more]
MEE39_ARATH8.407e-2735.43Probable LRR receptor-like serine/threonine-protei... [more]
CRK40_ARATH8.407e-2736.32Cysteine-rich receptor-like protein kinase 40 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC32007H03EF RVDevelop1 Citrus clementina cDNA clone C32007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920404 ID=FC920404; Name=FC920404; organism=Citrus clementina; type=EST; length=700bp
GTGACTCTGCTTGGCGCATGCCCAGAAGCCTGGTCCCTTGTATATGAGTA
TTTGCCCAATGGTAGTCTCCAAGACCGTCTTTTCCGTAAAAGCAACGTTT
CTCCCTTGTTATGGAAGGATCGAGCTCGGATTGCAGCTGAAATAGCTAGC
GGCCTTTGCTTTTTGCACTCATCCAAACCTGAAAAGATTGTCCATGGTGA
TTTGAAACCACAAAACATTCTTCTAGACTCTGAACTCAGCAGCAAGATAT
GCGATTTTGGCATCTGCCGGCTGGTAACCGAGGACACCCTTTATTTGCCC
AGTTTTCATCGGAGCACTGCGCCAAAGGGTTCTTTTCCATATGCAGATCC
AGAGTACCACAGGACTGGAGTCCTAACTCCCAAGTCCGACAGTTACTCCT
TTGGGTTGATAATCCTACAGCTACTTACTGGAAGGCTGCCAGTTGGGTTA
GCAGGTGAAGTGCGAAGAGCTGTGTCATGCGGGAAGTTATCATCCATCTT
GGATCCATTAGCTGGAGATTGGCCTACGTTTGTTGCAAGGCGTTTAGTGG
ACCTGGGATTGCAATGCTGTGAATTGTACGGTAGGGAGCGACCCGATATC
ACACCATCTCTGGTAAAGGAATTGGAACAGCTGCATGTTGCAGAGGAACG
ACCAGTTCCATCATTCTTTTTGTGCCCCATTCTTCAGGAAATAATGCATG
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