FC920404

Overview
NameFC920404
Unique NameFC920404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig398 contig Ccv1_Contig398:366..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 83/233 (35.62%), Postives = 120/233 (51.50%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKSN--VSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRR----------AVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERP 654
            V L+G C   E   LVYE++  GSL++ LF   N    PL W  R ++A + A GL FLHS  P K+++ D+K  NILLDS+ ++K+ DFG+ R    D       + ST   G+F YA PEY  TG L  +SD YSFG+++L+LL GR  +      +             S  K+  I+D  L   +    A RL  + +QC     + RP +   +V+ L QL  +  +P
Sbjct:  128 VKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSD-PVKVIYRDIKASNILLDSDFNAKLSDFGLAR----DGPMGEQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTM-DQVVRALVQLQDSVVKP 354          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 82/230 (35.65%), Postives = 123/230 (53.48%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRK-SNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGL---AGEVRRA-------VSCGKLSSILD-PLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEE 648
            V L+G C   E   LVYE++P GSL++ LFR+ S   PL W  R ++A   A GL FLH+++   +++ D K  NILLDSE ++K+ DFG+ +    D       H ST   G++ YA PEY  TG LT KSD YS+G+++L++L+GR  V      GE +          +  KL  ++D  L   +    A ++  L L+C     + RP++   +V  LE +    E
Sbjct:  136 VKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLHNAETS-VIYRDFKTSNILLDSEYNAKLSDFGLAK----DGPTGDKSHVSTRIMGTYGYAAPEYLATGHLTTKSDVYSYGVVLLEVLSGRRAVDKNRPPGEQKLVEWARPLLANKRKLFRVIDNRLQDQYSMEEACKVATLALRCLTFEIKLRPNMN-EVVSHLEHIQTLNE 359          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 76/213 (35.68%), Postives = 108/213 (50.70%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLL-WKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVG---------LAGEVRRAVSCGKLSSILDPLAGDWPTF-VARRLVDLGLQCCELYGRERPDI 600
            V LLG C E     LVYE++PNG+L + L  + + + +  W  R RIA +IA  L +LHSS    I H D+K  NI+LD +  +K+ DFG  R VT D       H +T   G+  Y DPEY ++   T KSD YSFG+++++L+TG   +          LA     A+   KL  I+D    D            +  +C  L GR+RP +
Sbjct:  504 VKLLGCCLETKVPVLVYEFIPNGNLFEHLHDEFDENIMATWNIRLRIAIDIAGALSYLHSSASSPIYHRDVKSTNIMLDEKYRAKVSDFGTSRTVTVD-----HTHLTTVVSGTVGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGEKSISFLRSQENRTLATYFILAMKENKLFDIIDARIRDGCMLSQVTATAKVARKCLNLKGRKRPSM 711          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 74/234 (31.62%), Postives = 115/234 (49.15%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV---------GLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPVPSFF 669
            V L G C  P +  L+Y+YLP GSL + L ++     L W  R  I    A GL +LH     +I+H D+K  NILLD  L +++ DFG+ +L+ ++       H +T   G+F Y  PEY ++G  T K+D YSFG+++L++L+G+LP           + G +   +S  +   I+D         V R  +D  L          PD  P++ + ++ L      P PS F
Sbjct:  361 VNLRGYCNSPTSKLLLYDYLPGGSLDEALHKRGE--QLDWDSRVNIIIGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDE-----ESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKLPTDASFIEKGFNIVGWLNFLISENRAKEIVDLSCEG----VERESLDALLSIATKCVSSSPDERPTMHRVVQLLESEVMTPCPSDF 583          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 71/214 (33.18%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   37 LVYEYLPNGSLQDRLFRKSNVSP--LLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVG-----LAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERP 654
            L+Y+Y+PNGSL   L+ K   S   L W  R +IA  IASGL +LH    + ++H D+KP N+L+DS+++ ++ DFG+ RL         S   +T   G+  Y  PE  R G  +  SD ++FG+++L++++GR P       +A  V    + G++ S +DP L   +    AR  + +GL CC      +P+  P +   L  L+  E+ P
Sbjct:  435 LIYDYIPNGSLDSLLYSKPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEQIVIHRDVKPSNVLIDSDMNPRLGDFGLARLYERG-----SQSCTTVVVGTIGYMAPELARNGNSSSASDVFAFGVLLLEIVSGRKPTDSGTFFIADWVMELQASGEILSAIDPRLGSGYDEGEARLALAVGLLCC----HHKPESRPLMRMVLRYLNRDEDVP 639          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: LRKA1_ARATH (Lectin-domain containing receptor kinase A4.1 OS=Arabidopsis thaliana GN=LECRKA4.1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 72/214 (33.64%), Postives = 115/214 (53.74%), Query Frame = 1
Query:   37 LVYEYLPNGSLQDRLFR--KSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVG-----LAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERP 654
            L+Y+Y+PNGSL   L+   + + + L W  R +IA  IASGL +LH    + ++H D+KP N+L+DS+++ ++ DFG+ RL    TL       +TA  G+  Y  PE  R G  +  SD ++FG+++L+++ GR P       L   V    + G++ S +DP L   +    AR  + +GL CC     ++P   PS+   L  L+  E  P
Sbjct:  438 LIYDYIPNGSLDSLLYTVPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEKIVIHRDVKPSNVLIDSKMNPRLGDFGLARLYERGTL-----SETTALVGTIGYMAPELSRNGNPSSASDVFAFGVLLLEIVCGRKPTDSGTFFLVDWVMELHANGEILSAIDPRLGSGYDGGEARLALAVGLLCC----HQKPASRPSMRIVLRYLNGEENVP 642          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 81/232 (34.91%), Postives = 125/232 (53.88%), Query Frame = 1
Query:    1 VTLLGACPEAWSL--VYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTG------RLPVG---LAGEVRRAVS-CGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDI--TPSLVKELEQLHVAEER 651
            V LLG C E   L  VYE++P GSL+  LFR+++  P  W  R +I    A GL FLHS + E +++ D K  NILLDS   +K+ DFG+ +L   D       H +T   G++ YA PEY  TG L  KSD ++FG+++L+++TG      + P G   L   +R  +S   ++  I+D  + G + T VA  +  + L C E   + RP +     +++ ++ L+V   R
Sbjct:  153 VKLLGYCREDKELLLVYEFMPKGSLESHLFRRND--PFPWDLRIKIVIGAARGLAFLHSLQRE-VIYRDFKASNILLDSNYDAKLSDFGLAKLGPADE----KSHVTTRIMGTYGYAAPEYMATGHLYVKSDVFAFGVVLLEIMTGLTAHNTKRPRGQESLVDWLRPELSNKHRVKQIMDKGIKGQYTTKVATEMARITLSCIEPDPKNRPHMKEVVEVLEHIQGLNVVPNR 377          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: CRK42_ARATH (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 83/244 (34.02%), Postives = 116/244 (47.54%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE-------VRRAVSCGKLSSILDPLAGDWPTFV------ARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPVPSFFLCPILQ 687
            V LLG   E     LVYEY+PN SL   LF +S    L W  R  I    A GL +LH   P +I+H D+K  N+LLD +L+ KI DFG+ R        L   H ST   G+  Y  PEY   G LT K+D YSFG+++L++  G        E       V    +  +L   LDP   D    V      A +++ +GL C +      P + PS+ +E+ ++    + P+PS    P L+
Sbjct:  372 VKLLGCSIEGPESLLVYEYVPNKSLDQFLFDESQSKVLNWSQRLNIILGTAEGLAYLHGGSPVRIIHRDIKTSNVLLDDQLNPKIADFGLAR-----CFGLDKTHLSTGIAGTLGYMAPEYVVRGQLTEKADVYSFGVLVLEIACGTRINAFVPETGHLLQRVWNLYTLNRLVEALDPCLKDEFLQVQGSEAEACKVLRVGLLCTQ----ASPSLRPSM-EEVIRMLTERDYPIPSPTSPPFLR 605          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: WAKLP_ARATH (Wall-associated receptor kinase-like 15 OS=Arabidopsis thaliana GN=WAKL15 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 71/188 (37.77%), Postives = 100/188 (53.19%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLW-----KDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGE---------VRRAVSCGKLSSILDPLAG 516
            V LLG C E     LVYE++PNG+L + ++        L+     + R  IA + A GL +LHSS    I H D+K  NILLD  L  K+ DFG+ RL   D       H +T  +G+  Y DPEY+    LT KSD YSFG+++ +LLT +  +    E         VR+A+  G+L  ++DP+ G
Sbjct:  411 VKLLGCCIELEMPVLVYEFVPNGTLFEHIYGGGGGGGGLYDHLPLRRRLMIAHQTAQGLDYLHSSSSPPIYHRDVKSSNILLDENLDVKVADFGLSRLGVSDV-----SHVTTCAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVLFELLTCKKAIDFNREEEDVNLVVFVRKALKEGRLMDVIDPVIG 593          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: RLK7_ARATH (Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 76/225 (33.78%), Postives = 116/225 (51.56%), Query Frame = 1
Query:    1 VTLLGACPEA--WSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVG-------LAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAE 645
            V+L+G C E    +LVYE+LPNG L+  L  K   S + W  R RIA E A GL +LH      +VH D+K  NILLD    +K+ DFG+ R    +         ST   G+  Y DPE + +G L  KSD YSFG+++L+++T +  +        +   V   ++ G +  I+DP L  D+    A R ++L + C      +RP ++  ++ EL++    E
Sbjct:  621 VSLVGYCCEGDYLALVYEFLPNGDLKQHLSGKGGNSIINWSIRLRIALEAALGLEYLHIGCTPPMVHRDVKTANILLDENFKAKLADFGLSRSFQGE----GESQESTTIAGTLGYLDPECYHSGRLGEKSDVYSFGIVLLEMITNQPVINQTSGDSHITQWVGFQMNRGDILEIMDPNLRKDYNINSAWRALELAMSCAYPSSSKRPSMS-QVIHELKECIACE 840          
The following BLAST results are available for this feature:
BLAST of FC920404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
Y3545_ARATH3.532e-2535.62Probable receptor-like protein kinase At3g55450 OS... [more]
APK1B_ARATH6.025e-2535.65Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
WAKLH_ARATH1.342e-2435.68Wall-associated receptor kinase-like 9 OS=Arabidop... [more]
FEI2_ARATH1.342e-2431.62LRR receptor-like serine/threonine-protein kinase ... [more]
LRKA3_ARATH1.753e-2433.18Lectin-domain containing receptor kinase A4.3 OS=A... [more]
LRKA1_ARATH1.753e-2433.64Lectin-domain containing receptor kinase A4.1 OS=A... [more]
CX32_ARATH1.753e-2434.91Probable serine/threonine-protein kinase Cx32, chl... [more]
CRK42_ARATH1.753e-2434.02Cysteine-rich receptor-like protein kinase 42 OS=A... [more]
WAKLP_ARATH2.290e-2437.77Wall-associated receptor kinase-like 15 OS=Arabido... [more]
RLK7_ARATH2.290e-2433.78Receptor-like protein kinase At5g59670 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC32007H03EF RVDevelop1 Citrus clementina cDNA clone C32007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920404 ID=FC920404; Name=FC920404; organism=Citrus clementina; type=EST; length=700bp
GTGACTCTGCTTGGCGCATGCCCAGAAGCCTGGTCCCTTGTATATGAGTA
TTTGCCCAATGGTAGTCTCCAAGACCGTCTTTTCCGTAAAAGCAACGTTT
CTCCCTTGTTATGGAAGGATCGAGCTCGGATTGCAGCTGAAATAGCTAGC
GGCCTTTGCTTTTTGCACTCATCCAAACCTGAAAAGATTGTCCATGGTGA
TTTGAAACCACAAAACATTCTTCTAGACTCTGAACTCAGCAGCAAGATAT
GCGATTTTGGCATCTGCCGGCTGGTAACCGAGGACACCCTTTATTTGCCC
AGTTTTCATCGGAGCACTGCGCCAAAGGGTTCTTTTCCATATGCAGATCC
AGAGTACCACAGGACTGGAGTCCTAACTCCCAAGTCCGACAGTTACTCCT
TTGGGTTGATAATCCTACAGCTACTTACTGGAAGGCTGCCAGTTGGGTTA
GCAGGTGAAGTGCGAAGAGCTGTGTCATGCGGGAAGTTATCATCCATCTT
GGATCCATTAGCTGGAGATTGGCCTACGTTTGTTGCAAGGCGTTTAGTGG
ACCTGGGATTGCAATGCTGTGAATTGTACGGTAGGGAGCGACCCGATATC
ACACCATCTCTGGTAAAGGAATTGGAACAGCTGCATGTTGCAGAGGAACG
ACCAGTTCCATCATTCTTTTTGTGCCCCATTCTTCAGGAAATAATGCATG
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