FC920405
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13 Identity = 54/162 (33.33%), Postives = 73/162 (45.06%), Query Frame = 3 Query: 135 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSE 620 RY V ++RR EGKTDY R+ L++ TP R VVR TN+ I Q++ + GD L +AY+ EL YG E + AAY TG+L A V+A Y A+LD+GL + G RVF +P+ E Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13 Identity = 56/163 (34.36%), Postives = 77/163 (47.24%), Query Frame = 3 Query: 135 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEK 623 RY V ++RRREGKTDY R +LI ++ R VVR TN+ I Q+I A + GD L +A + EL YG + +N AAY TG+L A V+A D+ A+LD+GL + T G +VF +PH E+ Sbjct: 6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADHPA----------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEE 135
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13 Identity = 54/166 (32.53%), Postives = 79/166 (47.59%), Query Frame = 3 Query: 135 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFA 632 +++V ++RRREGKTD+R R+ L+ K R V R + ++TAQ++S GD+VL SA+ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH ++ A Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA 138
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13 Identity = 50/165 (30.30%), Postives = 77/165 (46.67%), Query Frame = 3 Query: 135 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRF 629 RY+V ++RRREG+TDY R+RL+ ++ R VVR + + + Q+++ GD+ L+SA + EL +YG E N AAY TGLL + L YE V LD+G+ ++ G+RV+ +PH+ F Sbjct: 6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTLA-----EGYESGV---------------------LDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVF 137
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13 Identity = 53/170 (31.18%), Postives = 75/170 (44.12%), Query Frame = 3 Query: 135 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSK 644 RY V +RRRE +T+Y R+RL+ K R V R +N AQ++ GD +ASA + +L +G E N AAY TGLL +R ++ G D A+LD+GL T GN+VF +PH+E FA + + Sbjct: 6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQR 142
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 56/168 (33.33%), Postives = 76/168 (45.24%), Query Frame = 3 Query: 135 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAG 635 RY+V +RRREGKT+Y R RL+ K R VR +N+ + Q + A I GD V+A+A++ EL ++G + N AAY TG L R L+ + A+LDVGL K G+RVF IPHSE+ G Sbjct: 6 RYRVPLRRRREGKTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPG 140
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13 Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 3 Query: 105 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 239 K K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTP + Sbjct: 4 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13 Identity = 53/166 (31.93%), Postives = 78/166 (46.99%), Query Frame = 3 Query: 135 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFA 632 +++V ++RRREGKTD+R R+ L+ K R V R + ++TAQ+++ GD+VL SA++ EL + G + N AAY TGLLL + +K ED A+LD GL + T G +F IPH +K A Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA 138
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13 Identity = 53/171 (30.99%), Postives = 75/171 (43.86%), Query Frame = 3 Query: 135 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKD 647 RY+V +RRRE +TDY R+RL+ K R V R +N+ + AQ+I+ GD +A + L YG E N +AY TG L R ++ G D A+LD+GL T GN+VF IPH+E A +S++ Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRN 143
BLAST of FC920405 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 52/166 (31.33%), Postives = 79/166 (47.59%), Query Frame = 3 Query: 135 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFA 632 +++V ++RRREGKTD+R R+ L+ K R V R + ++ AQ+++ GD+VL SA++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH ++ A Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA 138 The following BLAST results are available for this feature:
BLAST of FC920405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920405 ID=FC920405; Name=FC920405; organism=Citrus clementina; type=EST; length=708bpback to top |