FC920407

Overview
NameFC920407
Unique NameFC920407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8317 contig Ccv1_Contig8317:4..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: MBK2_CAEEL (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2 OS=Caenorhabditis elegans GN=mbk-2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 41/112 (36.61%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD  G Y   + +++  RY++L  +G+G+FG+V++ +D + Q+ VA+K+VR+ +++   A  EI +L HL + D  G+ + + + ++F++RNH CI FE L  +L+E +KRN
Sbjct:  443 DDENGSYQLVVHDHIAYRYEVLKVIGKGSFGQVIKAFDHKYQQYVALKLVRNEKRFHRQADEEIRILDHLRRQDSDGTHNIIHMLDYFNFRNHKCITFELLSINLYELIKRN 554          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: MBK2_CAEBR (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2 OS=Caenorhabditis briggsae GN=mbk-2 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 41/112 (36.61%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD  G Y   + +++  RY++L  +G+G+FG+V++ +D + Q+ VA+K+VR+ +++   A  EI +L HL + D  G+ + + + ++F++RNH CI FE L  +L+E +KRN
Sbjct:  442 DDENGSYQLVVHDHIAYRYEVLKVIGKGSFGQVIKAFDHKYQQYVALKLVRNEKRFHRQADEEIRILDHLRRQDSDGTHNIIHMLDYFNFRNHKCITFELLSINLYELIKRN 553          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK3_RAT (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Rattus norvegicus GN=Dyrk3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD +G Y+    ++L  RY++L  +G+G+FG+V   +D + ++ VA+K+VR+ +++   A  EI +L+HL K DK GS + + +   F +RNH+C+ FE L   L+E +K+N
Sbjct:  190 DDADGAYIHVPRDHLAYRYEVLKIIGKGSFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLESFTFRNHVCMAFELLSIDLYELIKKN 301          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK3_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Mus musculus GN=Dyrk3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD +G Y+    ++L  RY++L  +G+G+FG+V   +D + ++ VA+K+VR+ +++   A  EI +L+HL K DK GS + + +   F +RNH+C+ FE L   L+E +K+N
Sbjct:  190 DDADGAYIHVPRDHLAYRYEVLKIIGKGSFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLESFTFRNHVCMAFELLSIDLYELIKKN 301          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK3_MACFA (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Macaca fascicularis GN=DYRK3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD +G Y+    ++L  RY++L  +G+G+FG+V   +D + ++ VA+K+VR+ +++   A  EI +L+HL K DK GS + + +   F +RNH+C+ FE L   L+E +K+N
Sbjct:  171 DDADGAYIHVPRDHLAYRYEVLKIIGKGSFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLESFTFRNHVCMAFELLSIDLYELIKKN 282          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK3_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Homo sapiens GN=DYRK3 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD +G Y+    ++L  RY++L  +G+G+FG+V   +D + ++ VA+K+VR+ +++   A  EI +L+HL K DK GS + + +   F +RNH+C+ FE L   L+E +K+N
Sbjct:  191 DDADGAYIHVPRDHLAYRYEVLKIIGKGSFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLESFTFRNHVCMAFELLSIDLYELIKKN 302          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: PPK5_SCHPO (Serine/threonine-protein kinase ppk5 OS=Schizosaccharomyces pombe GN=ppk5 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 41/113 (36.28%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRNN 675
            DD  G Y    G++L  RY+I+  +G+G+FG+VL+C D +  + VAIKV+++ +K+    ++E+ +L+ L + D    ++ ++  + FD+R H+CIV E LG +LF+ ++ NN
Sbjct:  500 DDDNGDYKAIQGDHLLYRYEIIDTVGKGSFGQVLKCIDHKRGQVVAIKVIKNRQKFHGQTLVEVGILKRLCEADPADKNNVIRYLSHFDFRGHLCIVTELLGSNLFDVIRENN 612          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK2_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Mus musculus GN=Dyrk2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 41/112 (36.61%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD +G YV    +++  RY++L  +G+G+FG+V++ +D +  + VA+K+VR+ +++   A  EI +L+HL K DK  + + + +   F +RNHIC+ FE L  +L+E +K+N
Sbjct:  202 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKN 313          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK2_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Homo sapiens GN=DYRK2 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 41/112 (36.61%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD +G YV    +++  RY++L  +G+G+FG+V++ +D +  + VA+K+VR+ +++   A  EI +L+HL K DK  + + + +   F +RNHIC+ FE L  +L+E +K+N
Sbjct:  204 DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKN 315          
BLAST of FC920407 vs. ExPASy Swiss-Prot
Match: DYRK2_CHICK (Dual specificity tyrosine-phosphorylation-regulated kinase 2 OS=Gallus gallus GN=DYRK2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 39/112 (34.82%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  337 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHICIVFEKLGPSLFEFLKRN 672
            DD +G Y+    +++  RY++L  +G+G+FG+V++ +D +  + VA+K+VR+ +++   A  EI +L+HL K DK  + + + +   F +R+HIC+ FE L  +L+E +K+N
Sbjct:  129 DDDQGSYIQVPHDHIAYRYEVLKVIGKGSFGQVVKAYDHKMHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNNMNVIHMLENFTFRSHICMTFELLSMNLYELIKKN 240          
The following BLAST results are available for this feature:
BLAST of FC920407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
MBK2_CAEEL7.865e-1936.61Dual specificity tyrosine-phosphorylation-regulate... [more]
MBK2_CAEBR7.865e-1936.61Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK3_RAT1.027e-1837.50Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK3_MOUSE1.027e-1837.50Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK3_MACFA1.027e-1837.50Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK3_HUMAN1.027e-1837.50Dual specificity tyrosine-phosphorylation-regulate... [more]
PPK5_SCHPO1.342e-1836.28Serine/threonine-protein kinase ppk5 OS=Schizosacc... [more]
DYRK2_MOUSE2.288e-1836.61Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK2_HUMAN2.288e-1836.61Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK2_CHICK1.136e-1734.82Dual specificity tyrosine-phosphorylation-regulate... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32007H08EF RVDevelop1 Citrus clementina cDNA clone C32007H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920407 ID=FC920407; Name=FC920407; organism=Citrus clementina; type=EST; length=677bp
ATCGTCACATTCGCCCAAAATATTCCCCCAATGCATAGGAACCCTAATTT
CCGAATGCTACCGTCATATCATCTCTCGCACTCTTATAATTCTGTTCGAA
TTTTCTACTAATATTCAAAACTATTGAGGAGTTTTGTGCTGCAGATACTT
AGGTTAAAAATCATACAAAGGAATAATAAATAGCAAACGATGATGGAGCA
GGAGCGAACCACTAAACGACGTCGGCTCGCTTGGGACGTGGCGCCATCGG
AGGCAGAGGCGCAACGGGCTCTGGTGGTGGGCCATGAAGGGGCTACGGCG
GCGGCTGCAAAACACGTGTCGCCGCCGAGAAGGGACGATGATCGTGAGGG
ACATTACGTTTTTAATCTCGGCGAAAATCTCACCCCCAGATATAAAATAC
TTAGCAAAATGGGTGAAGGCACATTTGGCCGTGTTTTGGAATGTTGGGAC
CGTCAAACACAGGAGCGTGTGGCAATCAAGGTAGTCAGAAGTATACGCAA
GTACCGTGATGCTGCAATGATTGAAATCGATGTTCTTCAGCATCTTGCTA
AAAATGACAAAGGCGGCAGCTCACATTGTGTGCAGATTCGAAATTGGTTT
GATTATCGCAATCATATTTGTATTGTGTTTGAGAAGCTTGGACCAAGTTT
ATTTGAATTTCTAAAGAGAAATAATAC
back to top