FC920411

Overview
NameFC920411
Unique NameFC920411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920411_ssr4 microsatellite FC920411_ssr4:4..19. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14137 contig Ccv1_Contig14137:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920411 vs. ExPASy Swiss-Prot
Match: TAF9_SCHPO (Transcription initiation factor TFIID subunit 9 OS=Schizosaccharomyces pombe GN=taf9 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 52/120 (43.33%), Postives = 76/120 (63.33%), Query Frame = 3 
Query:  159 PRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA-GKNT-IDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQLS 512
            P+D +++  +L S+GV  Y   V  Q L   +RY   ++ D+QVY+EH+ G+N  I  +DV+LAV S++N SF+ PP +E LLELA  RN+ PLP+     G  LPPE+  L  PN+ +S
Sbjct:   14 PKDVRLIHLILSSLGVPSYSQTVPLQLLTFAHRYTQQLIQDSQVYAEHSRGQNAPISVEDVRLAVASQINHSFTGPPPKEFLLELAMERNRKPLPQIQPSYGFRLPPEKYCLTQPNWIVS 133
[Close]
BLAST of FC920411 vs. ExPASy Swiss-Prot
Match: TAF9_YEAST (Transcription initiation factor TFIID subunit 9 OS=Saccharomyces cerevisiae GN=TAF9 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 3 
Query:  150 EDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKNT-----IDCDDVKLAVQSKVNSSFSQPPAREVLLELAKNRNKIPLPKSIAGRGIPLPPEQDTLISPNYQL 509
            E+ PRD +++  LL S  +  YE +V  Q ++  +RY   VL DA VY+++AG        +  +D++LA+ ++    F     +E++L+LA  RNK  LP+ +   G+ LPPE+  L +  + L
Sbjct:   27 EETPRDVRLLHLLLASQSIHQYEDQVPLQLMDFAHRYTQGVLKDALVYNDYAGSGNSAGSGLGVEDIRLAIAARTQYQFKPTAPKELMLQLAAERNKKALPQVMGTWGVRLPPEKYCLTAKEWDL 151
The following BLAST results are available for this feature:
BLAST of FC920411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TAF9_SCHPO4.431e-2043.33Transcription initiation factor TFIID subunit 9 OS... [more]
TAF9_YEAST1.631e-1432.80Transcription initiation factor TFIID subunit 9 OS... [more]

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Properties
Property NameValue
Genbank descriptionC32008A04EF RVDevelop1 Citrus clementina cDNA clone C32008A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920411 ID=FC920411; Name=FC920411; organism=Citrus clementina; type=EST; length=698bp
GGGGCGAGCGAGCGAGCGAGAGGGAGGGAAAGTGAGAAACCTGCTGATGC
CGGACAGAGAGAAGTTGGGCAATCCGGCGTCGTTTCCTTCCACTGTTAAT
TTGCTCCAAAAGGGTGTAGGATCCAGCTGAGGAAATGGCAGATGGAGATG
AGGACTTGCCAAGGGATGCAAAGATTGTAAAATCGCTGCTGAAATCAATG
GGTGTGGAGGACTATGAGCCCCGTGTTATACACCAGTTTCTGGAGTTGTG
GTACCGTTATGTTGTCGATGTATTGACTGATGCACAGGTCTATTCTGAGC
ATGCTGGCAAAAATACCATTGATTGTGATGATGTCAAGCTTGCTGTCCAG
TCTAAAGTCAATTCCAGCTTCTCACAACCCCCAGCAAGAGAGGTACTACT
GGAATTAGCTAAAAACAGGAATAAAATTCCATTGCCAAAGTCAATAGCAG
GGCGTGGTATCCCACTTCCTCCTGAGCAGGACACATTGATTAGCCCTAAC
TACCAGCTGTCGATTGAAAAGAAGGAATCTGCTCAGGCAGCGGAAGAAAT
GGAAGAAGATGAACAGAGTACCGAGCCGAATGCATCTGAAGAACAGAGGA
CAGATATGCTGCAACAAACCCCCTCAAAGGTATCATTTCCCCTTGCTAGA
CGTACAAAGTGAGATCTTGATTTGCTGGNCTTTCGGGATCATCTCATC
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