FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAII--------------DPAAIFAMLFG 452
            +YY +LG+   A+E EIKKAY   A K HPDKN  +P A + F+ + EAY VLSDP +R  YD YG+ G+ T                  DP A FA  FG
Sbjct:    4 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKN-KEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEEGLKTGGGSSGGSGGSFHYTFHGDPHATFASFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHELP (Chaperone protein dnaJ OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIG 479
            + + +YY+VLGV   ASE EIKKAY   A K HPD+NP D  A  +F+ + EAY++L+D  ++ AYD +G +G+            A F  +FG ++F D  G
Sbjct:    1 MSKRDYYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDSDKKAAYDQFGHAGVDPNRGGGGFGGGADFGDVFG-DVFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOSK (Chaperone protein dnaJ OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS-------GISTEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY+VLGVS TAS  E+KKAY  KA+++HPD+N ++P A   F+ + EAY VL D  ++ AYD YG +       G +          FA  F S++FED  G
Sbjct:    5 DYYEVLGVSRTASADELKKAYRTKAKELHPDRNADNPQAEAQFKEVNEAYDVLRDADKKAAYDRYGHAAFEGGMGGGARAGGYGQQGDFASAF-SDVFEDLFG 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOS5 (Chaperone protein dnaJ OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS--------GISTEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY+VLGVS  AS  E+KKAY  KA+++HPD+N ++P A   F+ + EAY VL D  ++ AYD YG +        G          A FA  F S++FED  G
Sbjct:    5 DYYEVLGVSRGASADELKKAYRTKAKELHPDRNADNPQAEAQFKEVNEAYDVLRDADKKAAYDRYGHAAFEGGMGGGGGARGAYGQQADFASAF-SDVFEDLFG 107          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOS4 (Chaperone protein dnaJ OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS--------GISTEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY+VLGVS TAS  E+KKAY  KA+++HPD+N ++P A   F+ + EAY VL D  ++ AYD YG +        G            FA  F S++FED  G
Sbjct:    5 DYYEVLGVSRTASADELKKAYRTKAKELHPDRNADNPQAEAQFKEVNEAYDVLRDADKKAAYDRYGHAAFEGGMGGGARAGGGYGQQGDFASAF-SDVFEDLFG 107          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHOS1 (Chaperone protein dnaJ OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS--------GISTEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY+VLGVS TAS  E+KKAY  KA+++HPD+N ++P A   F+ + EAY VL D  ++ AYD YG +        G            FA  F S++FED  G
Sbjct:    5 DYYEVLGVSRTASADELKKAYRTKAKELHPDRNADNPQAEAQFKEVNEAYDVLRDADKKAAYDRYGHAAFEGGMGGGARAGGGYGQQGDFASAF-SDVFEDLFG 107          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RALEH (Chaperone protein dnaJ OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP---NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI-----IDPAAIFAMLFGSELFEDYIGQLA 488
            +YY+VLGV   AS+ EIKKAY   A K HPD+NP   +  +A + F+ + EAY++LSDP ++ AYD YG +G+                FA  FG ++F D  GQ A
Sbjct:    5 DYYEVLGVGKNASDDEIKKAYRKLAMKYHPDRNPEGKDGKIAEEKFKEVKEAYEMLSDPEKKAAYDQYGHAGVDPNMAGGFGGAQGYGGFAEAFG-DIFGDIFGQQA 110          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_HELHP (Chaperone protein dnaJ OS=Helicobacter hepaticus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIID-PAAIFAMLFG--SELFEDYIG 479
            +YY++L ++ T+ +  IKKAY   A K HPD+NP+D  A + F+ + EAY+VLSD ++RQ YD YGK G+            F+ +FG    +FE   G
Sbjct:    5 DYYEILEITRTSDKETIKKAYRKMALKYHPDRNPDDKDAEEQFKRVNEAYEVLSDDSKRQIYDKYGKEGLQNSGFSGFSGRDFSDIFGDLGSIFESAFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOBW (Chaperone protein dnaJ OS=Escherichia coli (strain K12 / BW2952) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            MVK+ +YY++LGVS TA E EI+KAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    1 MVKQ-DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLL2 (Chaperone protein dnaJ OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFA 440
            +YY+VLGVS +AS+ EIKKAY   A + HPDKNP++  A ++F+ + EAY+VLS+  +R+ YD +G +G+ + A       +A
Sbjct:    4 DYYEVLGVSRSASKDEIKKAYRKLALQYHPDKNPDNKDAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGAGGAYA 86          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJB5_MOUSE8.737e-1443.56DnaJ homolog subfamily B member 5 OS=Mus musculus ... [more]
DNAJ_SHELP8.737e-1440.78Chaperone protein dnaJ OS=Shewanella loihica (stra... [more]
DNAJ_RHOSK8.737e-1442.72Chaperone protein dnaJ OS=Rhodobacter sphaeroides ... [more]
DNAJ_RHOS58.737e-1442.31Chaperone protein dnaJ OS=Rhodobacter sphaeroides ... [more]
DNAJ_RHOS48.737e-1442.31Chaperone protein dnaJ OS=Rhodobacter sphaeroides ... [more]
DNAJ_RHOS18.737e-1442.31Chaperone protein dnaJ OS=Rhodobacter sphaeroides ... [more]
DNAJ_RALEH8.737e-1442.06Chaperone protein dnaJ OS=Ralstonia eutropha (stra... [more]
DNAJ_HELHP8.737e-1440.40Chaperone protein dnaJ OS=Helicobacter hepaticus G... [more]
DNAJ_ECOBW8.737e-1442.86Chaperone protein dnaJ OS=Escherichia coli (strain... [more]
DNAJ_CHLL28.737e-1444.58Chaperone protein dnaJ OS=Chlorobium limicola (str... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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