FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB5_HUMAN (DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAII--------------DPAAIFAMLFG 452
            +YY +LG+   A+E EIKKAY   A K HPDKN  +P A + F+ + EAY VLSDP +R  YD YG+ G+ T                  DP A FA  FG
Sbjct:    4 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKN-KEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTGGGTSGGSSGSFHYTFHGDPHATFASFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHISS (Chaperone protein dnaJ OS=Shigella sonnei (strain Ss046) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIDS (Chaperone protein dnaJ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIBS (Chaperone protein dnaJ OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIB3 (Chaperone protein dnaJ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHESR (Chaperone protein dnaJ OS=Shewanella sp. (strain MR-7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGV   ASE EIKKAY   A K HPD+NP D  A  +F+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDANKKAAYDQFGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHESM (Chaperone protein dnaJ OS=Shewanella sp. (strain MR-4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGV   ASE EIKKAY   A K HPD+NP D  A  +F+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDANKKAAYDQFGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHESA (Chaperone protein dnaJ OS=Shewanella sp. (strain ANA-3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGV   ASE EIKKAY   A K HPD+NP D  A  +F+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDANKKAAYDQFGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHEPA (Chaperone protein dnaJ OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIG 479
            + + +YY+VLGV    SE EIKKAY   A K HPD+NP D  A  NF+ + EAY++L+D  ++ AYD +G +G+           +A F  +FG ++F D  G
Sbjct:    1 MSKRDYYEVLGVGRDTSEREIKKAYKRLAMKFHPDRNPGDKEAEANFKEVKEAYEILTDSDKKAAYDQFGHAGVDPNRGGGGYGGSADFGDVFG-DVFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHEON (Chaperone protein dnaJ OS=Shewanella oneidensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGV   ASE EIKKAY   A K HPD+NP D  A  +F+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDANKKAAYDQFGHAGV 74          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJB5_HUMAN1.141e-1343.56DnaJ homolog subfamily B member 5 OS=Homo sapiens ... [more]
DNAJ_SHISS1.141e-1343.00Chaperone protein dnaJ OS=Shigella sonnei (strain ... [more]
DNAJ_SHIDS1.141e-1343.00Chaperone protein dnaJ OS=Shigella dysenteriae ser... [more]
DNAJ_SHIBS1.141e-1343.00Chaperone protein dnaJ OS=Shigella boydii serotype... [more]
DNAJ_SHIB31.141e-1343.00Chaperone protein dnaJ OS=Shigella boydii serotype... [more]
DNAJ_SHESR1.141e-1347.30Chaperone protein dnaJ OS=Shewanella sp. (strain M... [more]
DNAJ_SHESM1.141e-1347.30Chaperone protein dnaJ OS=Shewanella sp. (strain M... [more]
DNAJ_SHESA1.141e-1347.30Chaperone protein dnaJ OS=Shewanella sp. (strain A... [more]
DNAJ_SHEPA1.141e-1340.78Chaperone protein dnaJ OS=Shewanella pealeana (str... [more]
DNAJ_SHEON1.141e-1347.30Chaperone protein dnaJ OS=Shewanella oneidensis GN... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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