FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PARUW (Chaperone protein dnaJ OS=Protochlamydia amoebophila (strain UWE25) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS------------TEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY++L V+  A+  EIKKAY  KA + HPDKNP D  A + F+ + EAY+VLSD  +RQ YD YGK  +              EA+      F M  G E   D+ G
Sbjct:    3 DYYEILEVARGATPEEIKKAYRKKAVQYHPDKNPGDADAEKRFKEISEAYEVLSDEKKRQVYDRYGKEALQGAAGGGQGFSSMDEALRTFMGAFGMGGGGESIFDFFG 110          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_OPITP (Chaperone protein dnaJ OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE-------------AIIDPAAIFAMLFGSE------LFEDYIG 479
            +YY++LGV   ASE E+KKAY  KA + HPDKNP +  A + F+ +  AY+VL DP +R AYD YG +                     DP  IF  +FG +      +FE+  G
Sbjct:    5 DYYELLGVQKGASEEELKKAYRKKAVQYHPDKNPGNKEAEEMFKKISHAYEVLKDPEKRAAYDRYGPAAFEGAGAGAGMGGMRGGGGFHDPFDIFREVFGQQGGMGGGIFEEMFG 119          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_MARMM (Chaperone protein dnaJ OS=Maricaulis maris (strain MCS10) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + ++Y+VLGV  TA E  +K AY  +A K HPD+NP D  A   F+V+GEAY VLSDP +R AYD  G
Sbjct:    1 MSKRDFYEVLGVDKTADEKTLKSAYRKQAMKYHPDRNPGDAEAEAQFKVVGEAYSVLSDPNKRAAYDRMG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_KLEP7 (Chaperone protein dnaJ OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG-----KSGISTEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY++L+D  +R AYD YG     + G+         A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEILTDAQKRAAYDQYGHAAFEQGGMGGGGGFGGGADFSDIFG-DVFGDIFG 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_KLEP3 (Chaperone protein dnaJ OS=Klebsiella pneumoniae (strain 342) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG-----KSGISTEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY++L+D  +R AYD YG     + G+         A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEILTDAQKRAAYDQYGHAAFEQGGMGGGGGFGGGADFSDIFG-DVFGDIFG 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_HERAR (Chaperone protein dnaJ OS=Herminiimonas arsenicoxydans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDP-------AAIFAMLFGSELFEDYIGQ 482
            ++Y++LG+   AS+ EIKKAY   A K HPD+NP+   A   F+   EAY++LSDP +R AYD YG +G      +DP          FA  FG ++F D  GQ
Sbjct:    5 DFYEILGLGKNASDEEIKKAYRKLAMKHHPDRNPDSKGAEDKFKEAKEAYEMLSDPQKRDAYDRYGHAG------VDPNMGGGGGGGGFADAFG-DIFGDIFGQ 101          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_FRAP2 (Chaperone protein dnaJ OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIG 479
            YY++L VS TAS  EIK+AY   A K HPD+NP+D  A   F+ + EAY++LSD  +R  YD +G +G++ +     A  F      ++F+ + G
Sbjct:    6 YYEILNVSKTASGVEIKRAYRKLAMKYHPDRNPDDKEAEIKFKEISEAYEILSDDGKRSRYDQFGHAGVNQQGGAGSAGGFGGF--EDIFDTFFG 98          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ESCF3 (Chaperone protein dnaJ OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOUT (Chaperone protein dnaJ OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ECOSM (Chaperone protein dnaJ OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_PARUW1.141e-1340.74Chaperone protein dnaJ OS=Protochlamydia amoebophi... [more]
DNAJ_OPITP1.141e-1338.26Chaperone protein dnaJ OS=Opitutus terrae (strain ... [more]
DNAJ_MARMM1.141e-1351.43Chaperone protein dnaJ OS=Maricaulis maris (strain... [more]
DNAJ_KLEP71.141e-1342.57Chaperone protein dnaJ OS=Klebsiella pneumoniae su... [more]
DNAJ_KLEP31.141e-1342.57Chaperone protein dnaJ OS=Klebsiella pneumoniae (s... [more]
DNAJ_HERAR1.141e-1342.31Chaperone protein dnaJ OS=Herminiimonas arsenicoxy... [more]
DNAJ_FRAP21.141e-1340.00Chaperone protein dnaJ OS=Francisella philomiragia... [more]
DNAJ_ESCF31.141e-1343.00Chaperone protein dnaJ OS=Escherichia fergusonii (... [more]
DNAJ_ECOUT1.141e-1343.00Chaperone protein dnaJ OS=Escherichia coli (strain... [more]
DNAJ_ECOSM1.141e-1343.00Chaperone protein dnaJ OS=Escherichia coli (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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