FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO55 (Chaperone protein dnaJ OS=Escherichia coli (strain 55989 / EAEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO45 (Chaperone protein dnaJ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO27 (Chaperone protein dnaJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ECO24 (Chaperone protein dnaJ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: SIS1_YEAST (Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            MVKET+ YD+LGVSP+A+E E+KK Y   A K HPDK   D    + F+ + EA+++L+DP +R+ YD YG
Sbjct:    1 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYG 68          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB5_BOVIN (DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAII--------------DPAAIFAMLFG 452
            +YY +LG+   A+E EIKKAY   A K HPDKN  +P A + F+ + EAY VLSDP +R  YD YG+ G+ T                  DP A FA  FG
Sbjct:    4 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKN-KEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTGGGSSGGSSGSFHYTFHGDPHATFASFFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEBR (DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=dnj-20 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            ++Y +LGVS  A+  +IKKAY  +A+++HPD+NP+D +A + FQ L  AY+VLSD  +R  YD +G+ G++
Sbjct:   24 DFYKILGVSKNANANQIKKAYRKQAKELHPDRNPDDEMANEKFQDLSAAYEVLSDKEKRAMYDRHGEEGVA 94          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLSU (Chaperone protein dnaJ OS=Wolinella succinogenes GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE 410
            ++E +YY++L +  +AS  EIKKAY   A K HPD+N     A + F+ + EAYQVLSD  +RQ YD YGK G+ ++
Sbjct:    1 MEEFDYYEILEIERSASGEEIKKAYRKMAMKYHPDRNEGSSEAEEMFKRVNEAYQVLSDEGKRQLYDRYGKQGLESQ 77          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_WIGBR (Chaperone protein dnaJ OS=Wigglesworthia glossinidia brevipalpis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI---STEAIIDPAAIFAMLFGSELFEDYIG 479
            +++YYD+LG+S  AS+ EIK AY   A K HPD+NP +  A   F+ + EAY+VL DP +R AY+ YG +     S+       A F+ +FG ++F D  G
Sbjct:    3 KSDYYDILGISKNASDREIKTAYKRLAVKFHPDRNPGNLEAESKFKEIKEAYEVLLDPKKRAAYNQYGHTAFDQGSSNTEFTSNADFSDIFG-DVFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SALTY (Chaperone protein dnaJ OS=Salmonella typhimurium GN=dnaJ PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI-------IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        +  A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFG-DVFGDIFG 106          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_ECO551.141e-1343.00Chaperone protein dnaJ OS=Escherichia coli (strain... [more]
DNAJ_ECO451.141e-1343.00Chaperone protein dnaJ OS=Escherichia coli O45:K1 ... [more]
DNAJ_ECO271.141e-1343.00Chaperone protein dnaJ OS=Escherichia coli O127:H6... [more]
DNAJ_ECO241.141e-1343.00Chaperone protein dnaJ OS=Escherichia coli O139:H2... [more]
SIS1_YEAST1.490e-1350.70Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 P... [more]
DNJB5_BOVIN1.490e-1343.56DnaJ homolog subfamily B member 5 OS=Bos taurus GN... [more]
DNJ20_CAEBR1.490e-1346.48DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=... [more]
DNAJ_WOLSU1.490e-1346.75Chaperone protein dnaJ OS=Wolinella succinogenes G... [more]
DNAJ_WIGBR1.490e-1341.58Chaperone protein dnaJ OS=Wigglesworthia glossinid... [more]
DNAJ_SALTY1.490e-1341.75Chaperone protein dnaJ OS=Salmonella typhimurium G... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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