FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ2_AZOSE (Chaperone protein dnaJ 2 OS=Azoarcus sp. (strain EbN1) GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAI----FAMLFGSELFEDYIG 479
            +YY+VLGV+  AS+ EIKKAY   A K HPD+NP++  +  +F+    AY++LSD  +R AYD YG +G+   A   P       FA  F S++F D  G
Sbjct:    5 DYYEVLGVNRDASDNEIKKAYRKLAMKHHPDRNPDNKDSEDHFKEAKNAYEILSDAQKRAAYDRYGHAGVDPSAGAGPGGQGFDGFADAF-SDIFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: PSI1_SCHPO (Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            MV +T+ YD L V P ASEAE+KKAY   A K HPDKNPN     + F+ +  AY+VLSDP +R+ YD YG
Sbjct:    1 MVADTKLYDCLEVRPEASEAELKKAYRKLALKYHPDKNPN---GEKKFKEISLAYEVLSDPQRRKLYDQYG 68          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  189 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG----KSGISTEAIIDPAAIFAMLFGSELF 464
            T+YY++LGVS  AS+ ++KKAY   A K HPDK   DP   + F+ L +AY+VLSDP +R+ YD YG    K G+      DP  IF   FG   F
Sbjct:   11 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFQSFFGGSPF 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_VIBVY (Chaperone protein dnaJ OS=Vibrio vulnificus (strain YJ016) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + ++Y+VLGVS  ASE +IKKAY   A K HPD+N  D  AA  F+ + EAY++L+DP ++ AYD YG
Sbjct:    1 MSKRDFYEVLGVSRDASERDIKKAYKRLAMKFHPDRNQGDESAADKFKEVKEAYEILTDPQKKAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_VIBVU (Chaperone protein dnaJ OS=Vibrio vulnificus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + ++Y+VLGVS  ASE +IKKAY   A K HPD+N  D  AA  F+ + EAY++L+DP ++ AYD YG
Sbjct:    1 MSKRDFYEVLGVSRDASERDIKKAYKRLAMKFHPDRNQGDESAADKFKEVKEAYEILTDPQKKAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIFL (Chaperone protein dnaJ OS=Shigella flexneri GN=dnaJ PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EI+KAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHIF8 (Chaperone protein dnaJ OS=Shigella flexneri serotype 5b (strain 8401) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EI+KAY   A K HPD+N  D  A   F+ + EAY+VL+D  +R AYD YG +      +        A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHEFN (Chaperone protein dnaJ OS=Shewanella frigidimarina (strain NCIMB 400) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + +YY+VLGV    SE EIKKAY   A K HPD+NP D  A  +F+ + EAY++L+D  ++ AYD +G +G+
Sbjct:    1 MSKRDYYEVLGVGRDTSEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEIKEAYEILTDSDKKAAYDQFGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_METS4 (Chaperone protein dnaJ OS=Methylobacterium sp. (strain 4-46) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG---SELFEDYIG 479
            + + +YY+VLGV+ TA EAE+K A+   A   HPD+NP D  A   F+ + EAYQ LSD  +R AYD +G +  S      P   F   FG   S++F+ + G
Sbjct:    1 MSKRDYYEVLGVAKTAGEAELKSAFRKLAMAYHPDRNPGDKEAEIKFKEVNEAYQTLSDDQKRAAYDRFGHAAFSQGGPGGPG--FGADFGDFMSDIFDTFFG 101          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_HAHCH (Chaperone protein dnaJ OS=Hahella chejuensis (strain KCTC 2396) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA---IIDPAAIFAMLFGSELFEDYIG 479
            +YY+VLGVS      E+KKAY   A K HPD+NP D  A + F+   EAY VLSD  +R AYD +G +G+   A        A F+ +FG ++F D  G
Sbjct:    5 DYYEVLGVSRDVDGKEVKKAYRRLAMKYHPDRNPGDASAEEMFKEATEAYDVLSDDQKRAAYDQFGHAGVDGNAGAGGFGGGASFSDIFG-DVFGDIFG 102          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ2_AZOSE1.947e-1343.00Chaperone protein dnaJ 2 OS=Azoarcus sp. (strain E... [more]
PSI1_SCHPO2.542e-1354.93Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 ... [more]
DNJH_CUCSA2.542e-1345.83DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
DNAJ_VIBVY2.542e-1350.00Chaperone protein dnaJ OS=Vibrio vulnificus (strai... [more]
DNAJ_VIBVU2.542e-1350.00Chaperone protein dnaJ OS=Vibrio vulnificus GN=dna... [more]
DNAJ_SHIFL2.542e-1342.00Chaperone protein dnaJ OS=Shigella flexneri GN=dna... [more]
DNAJ_SHIF82.542e-1342.00Chaperone protein dnaJ OS=Shigella flexneri seroty... [more]
DNAJ_SHEFN2.542e-1345.95Chaperone protein dnaJ OS=Shewanella frigidimarina... [more]
DNAJ_METS42.542e-1340.78Chaperone protein dnaJ OS=Methylobacterium sp. (st... [more]
DNAJ_HAHCH2.542e-1343.43Chaperone protein dnaJ OS=Hahella chejuensis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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