FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_XANAC (Chaperone protein dnaJ OS=Xanthomonas axonopodis pv. citri GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+VLGV+  AS+ E+KKAY   A K HPD+NP D  A   F+   EAY+VLSD  +R+AYDA+G
Sbjct:    1 MSKRDYYEVLGVARGASDEELKKAYRRCAMKHHPDRNPGDAAAEAAFKECKEAYEVLSDGNKRRAYDAHG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_VIBPA (Chaperone protein dnaJ OS=Vibrio parahaemolyticus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + ++Y+VLGVS  ASE +IKKAY   A K HPD+N  D  AA  F+ + EAY+VL+D  ++ AYD YG
Sbjct:    1 MSKRDFYEVLGVSRDASERDIKKAYKRLAMKFHPDRNQGDESAADKFKEVKEAYEVLTDSQKKAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRMK (Chaperone protein dnaJ OS=Stenotrophomonas maltophilia (strain K279a) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+VLGV+ TA++ E+KKAY   A K HPD+NP D  A  +F+   EAY+VLSD  +R+ YD++G
Sbjct:    1 MSKRDYYEVLGVARTATDDELKKAYRRCAMKFHPDRNPGDAAAEASFKECKEAYEVLSDGNKRRMYDSHG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SODGM (Chaperone protein dnaJ OS=Sodalis glossinidius (strain morsitans) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIID---PAAIFAMLFGSELFEDYIG 479
            +++YY++LGVS  A E EIKKAY  +A K HPD+N  +  A   F+ + EAY+VL+D  +R AYD YG +      +       A F+ +FG ++F D  G
Sbjct:    3 KSDYYEILGVSRDAEEREIKKAYKRQAMKFHPDRNRGNAEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGGASGADFSDIFG-DVFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ORITI (Chaperone protein dnaJ OS=Orientia tsutsugamushi (strain Ikeda) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 42/103 (40.78%), Postives = 51/103 (49.51%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE------------AIIDPAAIFAMLFG 452
            + E +YY VLGVS TAS+ EIK+AY     K HPD NP D  A Q  + + EAY +L D  +R AYD  G                     IDP  IF  +FG
Sbjct:    1 MSELDYYQVLGVSRTASQEEIKRAYRKLVLKYHPDHNPGDKNAEQKIKNINEAYDILKDEKKRSAYDQLGHQTFKNSGGGNYQQHHGFTGGIDPNDIFENIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPCP (Chaperone protein dnaJ OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAA--QNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAA------IFAMLFGSELFEDYIGQ 482
            +YY+VLGV  TASE EIKKAY   A K HPD+N  D   A  + F+   EAY++LSD  +R AYD +G +G+      A   P A       FA  FG ++F D  GQ
Sbjct:    5 DYYEVLGVGKTASEDEIKKAYRKLAMKHHPDRNQGDGAKASEEKFKEAKEAYEMLSDAQKRAAYDQFGHAGVDPNAGGAGFRPGAGGEGYGGFAEAFG-DIFGDIFGQ 111          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ENTS8 (Chaperone protein dnaJ OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI--------IDPAAIFAMLFGSELFEDYIG 479
            +YY++LGV  TA E EIKKAY   A K HPD+N  D  A   F+ + EAY++L+D  +R AYD YG +      +            A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVPKTADEREIKKAYKRLAMKFHPDRNQGDKEAEAKFKEIKEAYEILTDAQKRAAYDQYGHAAFEQGGMGGGGFGGGFGNGADFSDIFG-DVFGDIFG 107          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_EHRCJ (Chaperone protein dnaJ OS=Ehrlichia canis (strain Jake) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS---GISTEAIIDPAAIFAMLFGSELFEDYIG 479
            + +++YY++LGVS  A+  EIKKAY   A K HPD NP +  A + F+ L EAY VL D  +R AYD YG +   G +     D  + F+  F S++F D  G
Sbjct:    1 MSKSDYYELLGVSKNATSEEIKKAYRKMALKYHPDTNPGNKEAEEKFKELSEAYDVLIDQDKRAAYDKYGHNAFDGAAGRGGFDFNSGFSGDF-SDIFNDLFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCBP (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG-----SELFEDYIGQL 485
            + + +YY  LGV+ ++ E EIK+AY   A K HPD+NP +  + + F+ + EAY++L DP +R AYD YG S             F   F      S++F D  G +
Sbjct:    1 MSKQDYYKTLGVTQSSDEREIKRAYKKLAMKYHPDRNPGNKNSEEKFKTIKEAYEILIDPKKRTAYDQYGHSAFEQGNSTGNNNTFTHSFSSNSDFSDIFGDVFGDI 107          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIAC (Chaperone protein dnaJ OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPL--AAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG--SELFEDYIGQL 485
            + + ++Y+VLGV   AS+ EIKKAY   A K HPD+N  D    A + F+   EAY++LSDP +R AYD +G +G+    +  P    A  FG  +E F D  G +
Sbjct:    1 MSKRDFYEVLGVPKNASDEEIKKAYRKLAMKHHPDRNQGDAAKPAEEKFKEAKEAYEMLSDPQKRAAYDQFGHAGVDPN-MRGPGGAGAEGFGGFAEAFGDIFGDM 105          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_XANAC1.648e-1251.43Chaperone protein dnaJ OS=Xanthomonas axonopodis p... [more]
DNAJ_VIBPA1.648e-1250.00Chaperone protein dnaJ OS=Vibrio parahaemolyticus ... [more]
DNAJ_STRMK1.648e-1248.57Chaperone protein dnaJ OS=Stenotrophomonas maltoph... [more]
DNAJ_SODGM1.648e-1240.59Chaperone protein dnaJ OS=Sodalis glossinidius (st... [more]
DNAJ_ORITI1.648e-1240.78Chaperone protein dnaJ OS=Orientia tsutsugamushi (... [more]
DNAJ_LEPCP1.648e-1244.44Chaperone protein dnaJ OS=Leptothrix cholodnii (st... [more]
DNAJ_ENTS81.648e-1239.42Chaperone protein dnaJ OS=Enterobacter sakazakii (... [more]
DNAJ_EHRCJ1.648e-1241.75Chaperone protein dnaJ OS=Ehrlichia canis (strain ... [more]
DNAJ_BUCBP1.648e-1235.51Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DNAJ_ACIAC1.648e-1240.57Chaperone protein dnaJ OS=Acidovorax avenae subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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