FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ2_MYCPA (Chaperone protein dnaJ 2 OS=Mycobacterium paratuberculosis GN=dnaJ2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD 380
            E ++Y  LGVS  AS  EIK+AY   AR +HPD NP++P A + F+ + EA+ VLSDPA+R+ YD
Sbjct:    8 EKDFYKELGVSSDASPEEIKRAYRKLARDLHPDANPDNPAAGERFKAVSEAHNVLSDPAKRKEYD 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ1_MYCTU (Chaperone protein dnaJ 1 OS=Mycobacterium tuberculosis GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD 380
            E ++Y  LGVS  AS  EIK+AY   AR +HPD NP +P A + F+ + EA+ VLSDPA+R+ YD
Sbjct:    8 EKDFYQELGVSSDASPEEIKRAYRKLARDLHPDANPGNPAAGERFKAVSEAHNVLSDPAKRKEYD 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ1_MYCBO (Chaperone protein dnaJ 1 OS=Mycobacterium bovis GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD 380
            E ++Y  LGVS  AS  EIK+AY   AR +HPD NP +P A + F+ + EA+ VLSDPA+R+ YD
Sbjct:    8 EKDFYQELGVSSDASPEEIKRAYRKLARDLHPDANPGNPAAGERFKAVSEAHNVLSDPAKRKEYD 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJC10_RAT (DnaJ homolog subfamily C member 10 OS=Rattus norvegicus GN=Dnajc10 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  174 VMVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            V+  +  +Y +LGVS TAS  EI++A+   A K+HPDKNPN+P A  +F  +  AY+VL D   R+ YD YG+ G+
Sbjct:   29 VVGTDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJC10_MOUSE (DnaJ homolog subfamily C member 10 OS=Mus musculus GN=Dnajc10 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  174 VMVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            V+  +  +Y +LGVS TAS  EI++A+   A K+HPDKNPN+P A  +F  +  AY+VL D   R+ YD YG+ G+
Sbjct:   29 VVGTDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEHLRKKYDKYGEKGL 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB2_HUMAN (DnaJ homolog subfamily B member 2 OS=Homo sapiens GN=DNAJB2 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS------------------TEAIIDPAAIFAMLFGS-----ELFED 470
            YY++L V  +AS  +IKKAY  KA + HPDKNP N   A + F+ + EAY+VLSD  +R+ YD YG+ G++                  T     P  +F   FGS     ELF+D
Sbjct:    4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEAGSGGPGFTFTFRSPEEVFREFFGSGDPFAELFDD 119          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB1_MOUSE (DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI------------------STEAIIDPAAIFAMLFGS-ELFEDYIGQ 482
            +YY  LG++  AS+ EIK+AY  +A + HPDKN  +P A + F+ + EAY VLSDP +R+ +D YG+ G+                  S     DP A+FA  FG    F+ + GQ
Sbjct:    4 DYYQTLGLARGASDDEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGGSPSGGSSGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQ 118          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SHEHH (Chaperone protein dnaJ OS=Shewanella halifaxensis (strain HAW-EB4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE---AIIDPAAIFAMLFGSELFEDYIG 479
            + + ++Y+VLGV   ASE EIKKAY   A K HPD+NP +  A  +F+ + EAY++L+D  ++ AYD +G +G+            A F  +FG ++F D  G
Sbjct:    1 MSKRDFYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGNKEAEASFKEVKEAYEILTDGDKKAAYDQFGHAGVDPNRGGGGFGGGADFGDVFG-DVFGDIFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ORITB (Chaperone protein dnaJ OS=Orientia tsutsugamushi (strain Boryong) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 41/103 (39.81%), Postives = 51/103 (49.51%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE------------AIIDPAAIFAMLFG 452
            + + +YY VLGVS TAS+ EIK+AY     K HPD NP D  A Q  + + EAY +L D  +R AYD  G                     IDP  IF  +FG
Sbjct:    1 MSDLDYYQVLGVSRTASQEEIKRAYRKLVLKYHPDHNPGDKNAEQKIKNINEAYDILKDEKKRSAYDQLGHQAFKNSGGGNYQQHHGFTGGIDPNDIFENIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_EUBE2 (Chaperone protein dnaJ OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 43/103 (41.75%), Postives = 55/103 (53.40%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG--SELFEDYIG 479
            M  + +YY+VLGV   A +A IKKAY   A+K HPD NP D  A   F+   EAY VLSD  +R+ YD +G +     A    A  F   FG   ++F D  G
Sbjct:    1 MADKRDYYEVLGVPKDADDAAIKKAYRQLAKKYHPDMNPGDKEAEIKFKEASEAYAVLSDAEKRRQYDQFGHAAFEGGAGGAGAGGFDFDFGDMGDIFGDLFG 103          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ2_MYCPA1.648e-1252.31Chaperone protein dnaJ 2 OS=Mycobacterium paratube... [more]
DNAJ1_MYCTU1.648e-1252.31Chaperone protein dnaJ 1 OS=Mycobacterium tubercul... [more]
DNAJ1_MYCBO1.648e-1252.31Chaperone protein dnaJ 1 OS=Mycobacterium bovis GN... [more]
DJC10_RAT1.648e-1246.05DnaJ homolog subfamily C member 10 OS=Rattus norve... [more]
DJC10_MOUSE1.648e-1246.05DnaJ homolog subfamily C member 10 OS=Mus musculus... [more]
DNJB2_HUMAN2.152e-1238.79DnaJ homolog subfamily B member 2 OS=Homo sapiens ... [more]
DNJB1_MOUSE2.152e-1237.93DnaJ homolog subfamily B member 1 OS=Mus musculus ... [more]
DNAJ_SHEHH2.152e-1238.83Chaperone protein dnaJ OS=Shewanella halifaxensis ... [more]
DNAJ_ORITB2.152e-1239.81Chaperone protein dnaJ OS=Orientia tsutsugamushi (... [more]
DNAJ_EUBE22.152e-1241.75Chaperone protein dnaJ OS=Eubacterium eligens (str... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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