FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJC18_MOUSE (DnaJ homolog subfamily C member 18 OS=Mus musculus GN=Dnajc18 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 47/147 (31.97%), Postives = 70/147 (47.62%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS--------------TEAIIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEGEEFDAKKLQDKMKVVQKEREEK 593
            YYD+LGVS  AS+ E+KKAY   A K HPDKN   P A + F+ +G A+ VLS+P +R  YD YG   ++               EA I P  +F + FG        G     ++      T+  ++  ++ + +     K  E+K
Sbjct:   83 YYDILGVSHNASDEELKKAYKKLALKFHPDKN-CAPGATEAFKAIGNAFAVLSNPDKRLRYDEYGDEQVTFTVPRARSYHYYKDFEADISPEELFNVFFG--------GHFPSGNIHMFSNVTDDSQYYRRRHRHERTQTHKREEDK 220          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLPP (Chaperone protein dnaJ OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS-----TEAIIDPAAIFAMLFG 452
            + + +YYD+L VS  AS  EIKKAY   A K HPD+NP +  A + F+ +  AY+VLSD  +R  YD YG  G S     ++A  D + IF   FG
Sbjct:    1 MNKKDYYDLLEVSRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHDGASGGFDFSQAGGDFSDIFNDFFG 96          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_STRU0 (Chaperone protein dnaJ OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            +  TE+YD LGVS  AS+ EIKKAY   ++K HPD N  +P A Q ++ + EAY+ LSD  +R AYD YG +G
Sbjct:    1 MNNTEFYDRLGVSKDASQDEIKKAYRKMSKKYHPDIN-KEPGAEQKYKDVQEAYETLSDAQKRSAYDQYGAAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PARL1 (Chaperone protein dnaJ OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + ++YDVLGVS  AS  E+KKAY   A+K HPD+N  D  A Q F+ L EAY  L D   R AYD +G
Sbjct:    1 MSKRDFYDVLGVSRNASADELKKAYRSLAKKYHPDQNQGDKEAEQRFKELNEAYDALKDEQSRAAYDQFG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LACJO (Chaperone protein dnaJ OS=Lactobacillus johnsonii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            + +YYDVLGV   ASE+EI KAY   A+K HPD N ++P A + ++ + EAY+VL D  +R  YD +G++G++
Sbjct:    3 QRDYYDVLGVDKNASESEISKAYRKLAKKYHPDLN-HEPGAEEKYKEVNEAYEVLHDKQKRAQYDQFGQAGVN 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CLONN (Chaperone protein dnaJ OS=Clostridium novyi (strain NT) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 395
            +YY+VLG+S  AS+ EIKKAY   A K HPD+N  +  A + F+ + EAYQVLSDP ++  YD +G +
Sbjct:    5 DYYEVLGLSKGASDDEIKKAYRKLAMKYHPDRNQGNKEAEEKFKDINEAYQVLSDPQKKANYDQFGSA 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_AERHH (Chaperone protein dnaJ OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + ++Y+VLGVS  A E EIKKAY   A K HPD+N  D  A + F+ + EAY++L+D   R  YD YG +G+
Sbjct:    1 MSKRDFYEVLGVSKDADEREIKKAYKRLAMKYHPDRNQGDAGAEEKFKEVKEAYEILTDANLRARYDQYGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ACAM1 (Chaperone protein dnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            +YYD+LGVS +A   E+K++Y   ARK HPD N  +P A   F+ + +AY+ LSDP  R  YD +G++G+S+ A
Sbjct:    4 DYYDILGVSRSADPDELKRSYRRLARKYHPDVN-KEPGAEDKFKEINKAYETLSDPQMRGRYDQFGEAGVSSAA 76          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEEL (DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            ++Y +LGV+  A+  +IKKAY   A+++HPD+N +D +A + FQ L  AY+VLSD  +R  YD +G+ G++
Sbjct:   24 DFYKILGVAKNANANQIKKAYRKLAKELHPDRNQDDEMANEKFQDLSSAYEVLSDKEKRAMYDRHGEEGVA 94          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ZYMMO (Chaperone protein dnaJ OS=Zymomonas mobilis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 39/103 (37.86%), Postives = 53/103 (51.46%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG--SELFEDYIGQ 482
            + E +YY +L V  TA +  IK +Y   A + HPD+NP D  A + F+ + EAY  L DP +R AYD YGK               A  FG  S++FE   G+
Sbjct:    1 MSELDYYSLLEVERTADDKTIKTSYRRLAMRYHPDRNPGDSDAEERFKAISEAYDCLKDPQKRAAYDRYGKDAFQGGGGFGGFGGGAQDFGGFSDIFESVFGE 103          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DJC18_MOUSE2.811e-1231.97DnaJ homolog subfamily C member 18 OS=Mus musculus... [more]
DNAJ_WOLPP3.671e-1243.75Chaperone protein dnaJ OS=Wolbachia pipientis subs... [more]
DNAJ_STRU03.671e-1250.68Chaperone protein dnaJ OS=Streptococcus uberis (st... [more]
DNAJ_PARL13.671e-1250.00Chaperone protein dnaJ OS=Parvibaculum lavamentivo... [more]
DNAJ_LACJO3.671e-1246.58Chaperone protein dnaJ OS=Lactobacillus johnsonii ... [more]
DNAJ_CLONN3.671e-1250.00Chaperone protein dnaJ OS=Clostridium novyi (strai... [more]
DNAJ_AERHH3.671e-1245.95Chaperone protein dnaJ OS=Aeromonas hydrophila sub... [more]
DNAJ_ACAM13.671e-1245.95Chaperone protein dnaJ OS=Acaryochloris marina (st... [more]
DNJ20_CAEEL4.794e-1243.66DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=d... [more]
DNAJ_ZYMMO4.794e-1237.86Chaperone protein dnaJ OS=Zymomonas mobilis GN=dna... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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