FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            +YY++LGV+  A+  EIKKAY   ARK HPD N +DP AA+ F+ + EAY+VLSDP +R  YD +G +G+
Sbjct:    4 DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARYDQFGHAGV 73          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB11_RAT (DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG 452
            ++Y +LGV  +AS  +IKKAY   A ++HPD+NP+DP A + FQ LG AY+VLSD  +R+ YD YG+ G+          IF+  FG
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG 111          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB11_PONAB (DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG 452
            ++Y +LGV  +AS  +IKKAY   A ++HPD+NP+DP A + FQ LG AY+VLSD  +R+ YD YG+ G+          IF+  FG
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG 111          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB11_MOUSE (DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG 452
            ++Y +LGV  +AS  +IKKAY   A ++HPD+NP+DP A + FQ LG AY+VLSD  +R+ YD YG+ G+          IF+  FG
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG 111          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB11_HUMAN (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG 452
            ++Y +LGV  +AS  +IKKAY   A ++HPD+NP+DP A + FQ LG AY+VLSD  +R+ YD YG+ G+          IF+  FG
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG 111          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB11_CANFA (DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG 452
            ++Y +LGV  +AS  +IKKAY   A ++HPD+NP+DP A + FQ LG AY+VLSD  +R+ YD YG+ G+          IF+  FG
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG 111          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB11_BOVIN (DnaJ homolog subfamily B member 11 OS=Bos taurus GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG 452
            ++Y +LGV  +AS  +IKKAY   A ++HPD+NP+DP A + FQ LG AY+VLSD  +R+ YD YG+ G+          IF+  FG
Sbjct:   25 DFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPRAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFG 111          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI---STEAIIDPAAIFAMLFGSELF 464
            MVKET+ Y+VL V  TAS+AE+KKAY   A K HPDKNPN   A   F+ +  AY++L+D  +R  YD +G+ G+     +  +    +FA  FG  +F
Sbjct:    1 MVKETKLYEVLNVDVTASQAELKKAYRKLALKYHPDKNPN---AGDKFKEISRAYEILADEEKRATYDRFGEEGLQGGGADGGMSADDLFASFFGGGMF 96          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SYMTH (Chaperone protein dnaJ OS=Symbiobacterium thermophilum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY++LGV   A+EAEIKKA+   ARK HPD N +DP AA+ F+ + EAYQVLSDP +R  YD +G
Sbjct:    8 DYYEILGVPRNATEAEIKKAFRNLARKYHPDANKDDPDAAEKFKEINEAYQVLSDPEKRARYDQFG 73          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSEAE (Chaperone protein dnaJ OS=Pseudomonas aeruginosa GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDP-----------AAIFAMLFGSELFEDYIG 479
            ++Y+VLGV   ASEA++KKAY   A K HPD+NP D  A   F+   EAY+VLSD ++R AYD YG +G      +DP            A F+ +FG ++F D+ G
Sbjct:    5 DFYEVLGVERGASEADLKKAYRRLAMKYHPDRNPGDKEAEDKFKEANEAYEVLSDASKRAAYDQYGHAG------VDPNMGGGAGAGFGGASFSDIFG-DVFSDFFG 104          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CARHZ3.547e-1552.86Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
DJB11_RAT3.547e-1545.98DnaJ homolog subfamily B member 11 OS=Rattus norve... [more]
DJB11_PONAB3.547e-1545.98DnaJ homolog subfamily B member 11 OS=Pongo abelii... [more]
DJB11_MOUSE3.547e-1545.98DnaJ homolog subfamily B member 11 OS=Mus musculus... [more]
DJB11_HUMAN3.547e-1545.98DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]
DJB11_CANFA3.547e-1545.98DnaJ homolog subfamily B member 11 OS=Canis famili... [more]
DJB11_BOVIN3.547e-1545.98DnaJ homolog subfamily B member 11 OS=Bos taurus G... [more]
MAS5_SCHPO4.633e-1543.43Mitochondrial protein import protein mas5 OS=Schiz... [more]
DNAJ_SYMTH4.633e-1557.58Chaperone protein dnaJ OS=Symbiobacterium thermoph... [more]
DNAJ_PSEAE4.633e-1542.99Chaperone protein dnaJ OS=Pseudomonas aeruginosa G... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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