FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_VIBCM (Chaperone protein dnaJ OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + + ++Y+VLGV   ASE +IKKAY   A K HPD+N  D  AA+ F+ + EAY++L+D  ++ AYD YG +     A
Sbjct:    1 MSKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDAQKKAAYDQYGHAAFEQGA 78          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_VIBCH (Chaperone protein dnaJ OS=Vibrio cholerae GN=dnaJ PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + + ++Y+VLGV   ASE +IKKAY   A K HPD+N  D  AA+ F+ + EAY++L+D  ++ AYD YG +     A
Sbjct:    1 MSKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDAQKKAAYDQYGHAAFEQGA 78          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_VIBC3 (Chaperone protein dnaJ OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + + ++Y+VLGV   ASE +IKKAY   A K HPD+N  D  AA+ F+ + EAY++L+D  ++ AYD YG +     A
Sbjct:    1 MSKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDAQKKAAYDQYGHAAFEQGA 78          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SERP5 (Chaperone protein dnaJ OS=Serratia proteamaculans (strain 568) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG-----KSGISTEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY++LGVS TA E EIKKAY   A K HPD+N      A+ F+ + EAY++L+D  +R AYD YG     + G+         A F+ +FG ++F D  G
Sbjct:    5 DYYEILGVSKTAEEREIKKAYKRLAMKFHPDRNQEQDAEAR-FKEIKEAYEILTDAQKRAAYDQYGHAAFEQGGMGGGGGFGGGAEFSDIFG-DVFGDIFG 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHISN (Chaperone protein dnaJ OS=Rhizobium sp. (strain NGR234) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG-------SELFEDYIGQL 485
            + Y+ LGV   A E E+K A+   A K HPD+NP D  A ++F+ + EAY+ L DP +R AYD YG +      +    A F   F        S++FED  G++
Sbjct:    4 DLYETLGVKKNADEKELKSAFRKLAMKYHPDRNPGDQEAEKSFKEINEAYETLKDPQKRAAYDRYGHAAFEQGGM---GAGFGNGFAGGSAGGFSDIFEDIFGEM 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGA (Chaperone protein dnaJ OS=Mycoplasma gallisepticum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAI----IDPAAIFAMLFGSELFEDYIGQL 485
            M  + +YY++L VS +A++ +IKKA+   A K HPD+N  D  A + F+ + EAY+VLSD  +R+ YD YG  G++         +P  +F  +F    FE   G +
Sbjct:    1 MSSKRDYYEILEVSRSATQQDIKKAFRKLAMKYHPDRN-KDSDAEEKFKEVNEAYEVLSDEEKRKLYDTYGHEGLNASGFHQGGFNPYDVFNSVFSGFDFEGGFGDV 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_METPP (Chaperone protein dnaJ OS=Methylibium petroleiphilum (strain PM1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND--PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST----EAIIDPAAI--FAMLFGSELFEDYIGQ 482
            +YY+ LGV+  ASE +IKKAY   A K HPD+N  D    A ++F+   EAY++LSD  +R AYD YG +G+           P A   FA  FG ++F D  GQ
Sbjct:    5 DYYETLGVAKNASEEDIKKAYRKLAMKHHPDRNQGDGAKKAEESFKEAKEAYEMLSDAQKRAAYDQYGHAGVDPNMGGRGAGGPEAYGGFAEAFG-DIFGDIFGQ 108          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRJ (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            E +YYD+LGVS  ASE +IK+AY   A K HPD N ++P A + F+ + EAY+ LSD  +R  YD +G +G
Sbjct:    3 EQDYYDILGVSKDASEKDIKRAYRRLAAKYHPDVN-HEPGAEEKFKKINEAYETLSDSQKRAQYDQFGSAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRD (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain DSM 20016) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            E +YYD+LGVS  ASE +IK+AY   A K HPD N ++P A + F+ + EAY+ LSD  +R  YD +G +G
Sbjct:    3 EQDYYDILGVSKDASEKDIKRAYRRLAAKYHPDVN-HEPGAEEKFKKINEAYETLSDSQKRAQYDQFGSAG 72          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_JANSC (Chaperone protein dnaJ OS=Jannaschia sp. (strain CCS1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDP-------AAIFAMLFGSELFEDYIG 479
            +YY+VLGVS  AS  EIKK +  KA+++HPD+N ++P A   F+   EAY VL D  ++ AYD +G +         P          FA  F S++FED  G
Sbjct:    5 DYYEVLGVSKGASADEIKKGFRTKAKELHPDRNADNPEAESQFKEANEAYDVLKDADKKAAYDRFGHAAFDGGMAGGPRGGGGQGQGDFASAF-SDVFEDLFG 106          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_VIBCM4.794e-1243.59Chaperone protein dnaJ OS=Vibrio cholerae serotype... [more]
DNAJ_VIBCH4.794e-1243.59Chaperone protein dnaJ OS=Vibrio cholerae GN=dnaJ ... [more]
DNAJ_VIBC34.794e-1243.59Chaperone protein dnaJ OS=Vibrio cholerae serotype... [more]
DNAJ_SERP54.794e-1241.58Chaperone protein dnaJ OS=Serratia proteamaculans ... [more]
DNAJ_RHISN4.794e-1237.14Chaperone protein dnaJ OS=Rhizobium sp. (strain NG... [more]
DNAJ_MYCGA4.794e-1236.45Chaperone protein dnaJ OS=Mycoplasma gallisepticum... [more]
DNAJ_METPP4.794e-1242.86Chaperone protein dnaJ OS=Methylibium petroleiphil... [more]
DNAJ_LACRJ4.794e-1249.30Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_LACRD4.794e-1249.30Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_JANSC4.794e-1239.81Chaperone protein dnaJ OS=Jannaschia sp. (strain C... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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