FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAA5 (Chaperone protein dnaJ OS=Cyanothece sp. (strain ATCC 51142) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            +YYD+LGV   AS+ ++K+AY   ARK HPD N  +P A + F+ +  AY+VLS+P  R  YD +G++G+S
Sbjct:    4 DYYDILGVDRNASKEDLKRAYRRLARKYHPDVN-KEPGAEERFKEINRAYEVLSEPDTRSRYDQFGEAGVS 73          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOPE (Chaperone protein dnaJ OS=Clostridium perfringens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLG+   AS+ EIK+A+   A K HPD+NP D  A +NF+ + EAY VL DP ++  YD +G
Sbjct:    5 DYYEVLGLQKGASDDEIKRAFRKMAMKYHPDRNPGDKEAEENFKEVNEAYDVLKDPDKKAKYDQFG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BARHE (Chaperone protein dnaJ OS=Bartonella henselae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 34/102 (33.33%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI--STEAIIDPAAIFAMLFGSELFEDYIGQL 485
            + +YY++LGV+    + ++K A+   A + HPD+N  D  A + F+ +GEAY+VL DP +R AYD +G +    +      P + F+    +++FED+ G++
Sbjct:    2 KVDYYEILGVTRECDDKKLKSAFRKLAMQYHPDRNAGDKEAERKFKEIGEAYEVLKDPQKRAAYDRFGHAAFENNNNGGGSPFSGFSAGGFADIFEDFFGEI 103          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_AZOC5 (Chaperone protein dnaJ OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPA---AIFAMLFGSELFEDYIG 479
            +YY+VLG    A E  +K ++   A K HPDKNP DP A   F+ + EAY+VL DP +R AYD YG +          A   A FA  F +++F+D  G
Sbjct:    5 DYYEVLGCDRGADETVLKASFRKLAMKWHPDKNPGDPEAEIRFKEISEAYEVLKDPQKRGAYDRYGHAAFENGGGPGGAGFNADFASTF-ADIFDDLFG 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_AERS4 (Chaperone protein dnaJ OS=Aeromonas salmonicida (strain A449) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + ++Y+VLGVS  A E EIKKAY   A K HPD+N  D  + + F+ + EAY++L+D   R  YD YG +G+
Sbjct:    1 MSKRDFYEVLGVSKGADEREIKKAYKPLAMKFHPDRNQGDAASEEKFKEVKEAYEILTDENLRARYDQYGHAGV 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  153 IFGS*ESVMVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST-----EAIIDPAAIFAMLFGS 455
            +FG   S     T++Y++LGV  TA+  ++KKAY   A K HPDK   DP   + F+ L +AY+VLSDP +R+ YD YG+  +           DP  IF+  FGS
Sbjct:    1 MFGRGPSRKSDNTKFYEILGVPKTAAPEDLKKAYKKAAIKNHPDKG-GDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGS 102          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB12_MOUSE (DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG-------KSGIS-------TEAIIDPAAIFAMLFG 452
            +YY++LGVS +AS+ ++KKAY   A K HPDKN + P A + F+ +G AY VLS+P +R+ YD +G       + G S        EA I P  +F M FG
Sbjct:  111 DYYEILGVSRSASDEDLKKAYRKLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHSHGDFHRGFEADISPEDLFNMFFG 210          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_TRIEI (Chaperone protein dnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 35/94 (37.23%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDY 473
            +YY++LGVS +A + E+K+AY   ARK HPD N  +P + + F+ +  AY++LSDP  +  +D +G++G+S  A    +  F+  F +++FE +
Sbjct:    4 DYYEILGVSRSADKEELKRAYRRLARKYHPDVN-KEPGSEERFKEINRAYEILSDPEMKARFDRFGEAGVSGGAASGFSTDFSDSF-ADIFESF 95          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_POLNA (Chaperone protein dnaJ OS=Polaromonas naphthalenivorans (strain CJ2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPND--PLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAI----FAMLFGSELFEDYIG 479
            +YYD LGV   AS+ +IKKAY   A K HPD+N  D   ++   F+   EAY++LSD  +R AYD YG +G+       P A     FA  FG ++F D  G
Sbjct:    5 DYYDTLGVPKNASDEDIKKAYRKLAMKHHPDRNQGDTSKVSEDKFKEAKEAYEMLSDAQKRAAYDQYGHAGVDPNRGGGPGAEGFGGFAEAFG-DIFGDVFG 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LACGA (Chaperone protein dnaJ OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            + +YYDVLGV   ASE++I KAY   A+K HPD N ++P A + ++ + EAY+VL D  ++  YD +G++G++ +A
Sbjct:    3 QRDYYDVLGVDKNASESDINKAYRKLAKKYHPDLN-HEPGAEEKYKEVNEAYEVLHDKQKKAQYDQFGQAGVNGQA 77          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_CYAA54.794e-1246.48Chaperone protein dnaJ OS=Cyanothece sp. (strain A... [more]
DNAJ_CLOPE4.794e-1248.48Chaperone protein dnaJ OS=Clostridium perfringens ... [more]
DNAJ_BARHE4.794e-1233.33Chaperone protein dnaJ OS=Bartonella henselae GN=d... [more]
DNAJ_AZOC54.794e-1241.41Chaperone protein dnaJ OS=Azorhizobium caulinodans... [more]
DNAJ_AERS44.794e-1244.59Chaperone protein dnaJ OS=Aeromonas salmonicida (s... [more]
DNAJ2_ARATH4.794e-1240.57Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G... [more]
DJB12_MOUSE4.794e-1242.57DnaJ homolog subfamily B member 12 OS=Mus musculus... [more]
DNAJ_TRIEI6.262e-1237.23Chaperone protein dnaJ OS=Trichodesmium erythraeum... [more]
DNAJ_POLNA6.262e-1242.16Chaperone protein dnaJ OS=Polaromonas naphthaleniv... [more]
DNAJ_LACGA6.262e-1243.42Chaperone protein dnaJ OS=Lactobacillus gasseri (s... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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