FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_HAEIN (Chaperone protein dnaJ OS=Haemophilus influenzae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQL 485
            +YY+VLG+   ASE EIK+AY   A K HPDKN     A + F+ + EAY+VL D  +R AYD YG +          A  F   FG   F D  G +
Sbjct:    5 DYYEVLGLQKGASEDEIKRAYKRLASKHHPDKNQGSKEAEEKFKEINEAYEVLGDDQKRAAYDQYGHAAFEQGG---GAGGFGGGFGGADFGDMFGDI 99          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ENT38 (Chaperone protein dnaJ OS=Enterobacter sp. (strain 638) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            ++Y++LGV  TA E EIKKAY   A K HPD+N  D  A   F+ + EAY++L+D  +R AYD YG
Sbjct:    5 DFYEILGVPKTAEEREIKKAYKRLAMKFHPDRNQGDKEAEAKFKEIKEAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_THEEB (Chaperone protein dnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS--TEAIIDPAAIFAMLFGSELFEDYIGQLAMAS 497
            ++Y++LGVS +A   E+K+AY   ARK HPD N  +P A + F+ +  AY+VLSDP  R  YD +G++G+S    A      I  M   +++FE + G    +S
Sbjct:    4 DFYEILGVSRSADAEELKRAYRRLARKYHPDVN-KEPGAEEKFKEINRAYEVLSDPQARANYDRFGEAGVSGVGAAGFSDFGIGDMGGFADIFETFFGGFTTSS 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNPX (Chaperone protein dnaJ OS=Synechococcus sp. (strain WH8102) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            +YYD+LGV   A    +K+AY  KARK HPD N  +P A   F+ +G AY+VLSDP  R  YD +G++G+   A
Sbjct:    3 DYYDLLGVGRDADADTLKRAYRSKARKYHPDIN-KEPGAEDRFKEIGRAYEVLSDPQTRARYDQFGEAGLGGAA 75          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJA (Chaperone protein dnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS-TEAIIDPAAIFAMLFG-SELFEDYIGQLAMASV 500
            +YY++LGVS  +S+ EIK+AY   ARK HPD N  +P A   F+ +  AY+VLSD   R  YD +G++G+S   A       FA + G ++LFE +    A   V
Sbjct:    4 DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVLSDDELRARYDRFGEAGLSGAAAAASGFQDFAGIGGFADLFESFFTNFAGGGV 107          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHILO (Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 3
Query:  186 ETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQL 485
            + ++Y+ LGV   A E E+K A+   A + HPD+NP D      F+ + EAY+ L DP +R AYD +G +      +   A  F     +++FED  G +
Sbjct:    2 KADFYETLGVQKGADEKELKSAFRKLAMQFHPDRNPGDHSCEHKFKEINEAYETLKDPQKRAAYDRFGHAAFEQGGMNGGAQGFGAGGFADIFEDIFGDM 101          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PSYWF (Chaperone protein dnaJ OS=Psychrobacter sp. (strain PRwf-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS---------GISTEAIIDPAAIFAMLFGSELFEDYIGQ 482
            + + ++Y+VLGV  +A E EIKKAY   A K HPD+N +DP A + F+    AY+VLSD  +R AYD  G +         G       +   IF  +FG+  F D  GQ
Sbjct:    1 MSKRDFYEVLGVDRSADEREIKKAYRKLAMKYHPDRNSDDPDAEEKFKEASMAYEVLSDKEKRSAYDRMGHAAFENGMGGGGFGGAGAGNFQDIFGDIFGN--FGDIFGQ 108          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PICTO (Chaperone protein dnaJ OS=Picrophilus torridus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA---------IIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIF 518
            +YY +LGV   AS+ +IKKA+   A+K HPD NP +  A + F+ + EAY+VLSDP +R+ YD  G +  +  +           D   IF   FG    + + G     +   LDI+
Sbjct:    4 DYYAILGVDRNASQDDIKKAFRELAKKYHPDANPGNKEAEEKFKEIAEAYEVLSDPQKRKQYDETGTTDFNAGSGFNWQDFTHFDDINDIFNQFFGGNFGDTFFG--GYTNQPDLDIY 119          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_METTE (Chaperone protein dnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG-SELFEDYIG 479
            M    +YY++LG+S  A+  +IKK+Y   A K HPD+N  +P A + F+ + EAY VLSDP +R  YD +G +GI+ +   +     A   G  ++FE + G
Sbjct:    1 MATTRDYYEILGLSRDATPEDIKKSYRKLALKYHPDRN-KEPGAEEKFKEISEAYAVLSDPEKRAQYDRFGHAGINGQYTAEDIFRGADFSGFGDIFEMFFG 101          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_HYPNA (Chaperone protein dnaJ OS=Hyphomonas neptunium (strain ATCC 15444) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+VLGV     E  +K AY   A K HPD+N  D  A   F+ +GEAY +LSDP +R AYD YG
Sbjct:    1 MSKRDYYEVLGVERGVDEKALKSAYRKLAMKYHPDQNAGDTAAEDKFKEVGEAYAILSDPQKRAAYDRYG 70          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_HAEIN6.262e-1241.84Chaperone protein dnaJ OS=Haemophilus influenzae G... [more]
DNAJ_ENT386.262e-1250.00Chaperone protein dnaJ OS=Enterobacter sp. (strain... [more]
DNAJ_THEEB8.178e-1238.46Chaperone protein dnaJ OS=Thermosynechococcus elon... [more]
DNAJ_SYNPX8.178e-1247.30Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_SYNJA8.178e-1240.95Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_RHILO8.178e-1234.00Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ P... [more]
DNAJ_PSYWF8.178e-1239.09Chaperone protein dnaJ OS=Psychrobacter sp. (strai... [more]
DNAJ_PICTO8.178e-1234.75Chaperone protein dnaJ OS=Picrophilus torridus GN=... [more]
DNAJ_METTE8.178e-1238.24Chaperone protein dnaJ OS=Methanosarcina thermophi... [more]
DNAJ_HYPNA8.178e-1247.14Chaperone protein dnaJ OS=Hyphomonas neptunium (st... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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