FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ERWCT (Chaperone protein dnaJ OS=Erwinia carotovora subsp. atroseptica GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+ LGV+ +A + EIKKAY   A K HPD+NP D  A   F+ + EAY++L D  +R AYD YG
Sbjct:    5 DYYESLGVAKSADDREIKKAYKRLAMKYHPDRNPGDSEAEAKFKEIKEAYEILIDSQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ENTFA (Chaperone protein dnaJ OS=Enterococcus faecalis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  177 MVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG 398
            M  + +YY+VLG++  AS+ EIKKAY   ++K HPD N  +  A + F+ + EAY+VLSDP ++ AYD YG +G
Sbjct:    1 MATKRDYYEVLGLAKGASDDEIKKAYRKLSKKYHPDIN-KEADAEEKFKEVSEAYEVLSDPQKKAAYDQYGHAG 73          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLCH (Chaperone protein dnaJ OS=Chlorobium chlorochromatii (strain CaD3) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEG 527
            +YY+ LGV+ ++++ +IKKAY   A + HPDKNP +  A ++F+ + EAY+VLS+  +R+ YD +G +G+ + A       +A   G   F D          A  D+FT G
Sbjct:    4 DYYETLGVTRSSNKDDIKKAYRKLAVQYHPDKNPGNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGGAYA---GGADFSDIFS-------AFNDMFTGG 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ1_ARATH (Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana GN=ATJ1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYD 380
            YYDVLGVSP A+  EIKK+++  A+K HPD N N+P A + FQ + EAY+ L +  +R+ YD
Sbjct:   49 YYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKFQEIREAYETLGNSERREEYD 110          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJC18_HUMAN (DnaJ homolog subfamily C member 18 OS=Homo sapiens GN=DNAJC18 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 48/147 (32.65%), Postives = 70/147 (47.62%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS--------------TEAIIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEGEEFDAKKLQDKMKVVQKEREEK 593
            YY++LGVS  AS+ E+KKAY   A K HPDKN   P A   F+ +G A+ VLS+P +R  YD YG   ++               EA I P  +F + FG        G     ++      T+   +  ++ + +    QKE EE+
Sbjct:   83 YYEILGVSRDASDEELKKAYRKLALKFHPDKN-CAPGATDAFKAIGNAFAVLSNPDKRLRYDEYGDEQVTFTAPRARPYNYYRDFEADITPEELFNVFFG--------GHFPTGNIHMFSNVTDDTYYYRRRHRHERTQTQKEEEEE 220          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_RHIME (Chaperone protein dnaJ OS=Rhizobium meliloti GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG-------SELFEDYIGQL 485
            + Y+ LGV   A E E+K A+   A K HPD+NP D  + ++F+ + EAY+ L DP +R AYD YG +      +    A F   F        S++FED  G++
Sbjct:    4 DLYETLGVQKNADEKELKSAFRKLAMKYHPDRNPGDQESEKSFKEINEAYETLKDPQKRAAYDRYGHAAFEQGGM---GAGFGNGFAGGGAHGFSDIFEDIFGEM 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_METTH (Chaperone protein dnaJ OS=Methanobacterium thermoautotrophicum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQLAMASVASLDIFTEG 527
            +YY++LGV   A + EIKKAY   ARK HPD + +DP AA+ F+ + EAY VLSD  +R  YD +G +G+   +  D       +F +  FED    L        D+F  G
Sbjct:    5 DYYEILGVDRGADKKEIKKAYRRLARKYHPDVS-DDPDAAEKFKEISEAYAVLSDDEKRARYDRFGHAGMDGFSQED-------IFNNINFEDIFSGLGFDIGNIFDMFGFG 108          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_METRJ (Chaperone protein dnaJ OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG---SELFEDYIG 479
            + + +YY++LGV+ TA+E E+K A+   A   HPD+NP D  A   F+ + EAYQ LSD  +R AYD +G +  S          F   FG   S++F+++ G
Sbjct:    1 MSKRDYYEILGVTKTATEGEMKVAFRKLAMTYHPDRNPGDKDAEIKFKEINEAYQCLSDGQKRAAYDRFGHAAFSQGG---GGPGFGNEFGDFMSDIFDNFFG 100          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ALISL (Chaperone protein dnaJ OS=Aliivibrio salmonicida (strain LFI1238) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + ++Y+VLGVS  ASE +IKKAY   A K HPD+N  D  A + F+ +  AY++L+D  +R AYD YG
Sbjct:    1 MSKRDFYEVLGVSRDASERDIKKAYKRLAMKFHPDRNQGDETAPEKFKEVKVAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ACISJ (Chaperone protein dnaJ OS=Acidovorax sp. (strain JS42) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPL--AAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            + + ++Y+VLGV   AS+ EIKKAY   A K HPD+N  D    A + F+   EAY++LSD  +R AYD YG +G+
Sbjct:    1 MSKRDFYEVLGVPKNASDDEIKKAYRKLAMKYHPDRNQGDAAKPAEEKFKEAKEAYEILSDAQKRAAYDQYGHAGV 76          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_ERWCT8.178e-1250.00Chaperone protein dnaJ OS=Erwinia carotovora subsp... [more]
DNAJ_ENTFA8.178e-1247.30Chaperone protein dnaJ OS=Enterococcus faecalis GN... [more]
DNAJ_CHLCH8.178e-1235.71Chaperone protein dnaJ OS=Chlorobium chlorochromat... [more]
DNAJ1_ARATH8.178e-1251.61Chaperone protein dnaJ 1, mitochondrial OS=Arabido... [more]
DJC18_HUMAN8.178e-1232.65DnaJ homolog subfamily C member 18 OS=Homo sapiens... [more]
DNAJ_RHIME1.068e-1136.19Chaperone protein dnaJ OS=Rhizobium meliloti GN=dn... [more]
DNAJ_METTH1.068e-1139.29Chaperone protein dnaJ OS=Methanobacterium thermoa... [more]
DNAJ_METRJ1.068e-1137.86Chaperone protein dnaJ OS=Methylobacterium radioto... [more]
DNAJ_ALISL1.068e-1147.14Chaperone protein dnaJ OS=Aliivibrio salmonicida (... [more]
DNAJ_ACISJ1.068e-1146.05Chaperone protein dnaJ OS=Acidovorax sp. (strain J... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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