FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3
Query:  153 IFGS*ESVMVKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST-----EAIIDPAAIFAMLFGSELF 464
            +FG   S     T++Y++LGV  +AS  ++KKAY   A K HPDK   DP   + F+ L +AY+VLSDP +R+ YD YG+  +           DP  IF+  FG   F
Sbjct:    1 MFGRGPSKKSDNTKFYEILGVPKSASPEDLKKAYKKAAIKNHPDKG-GDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGPF 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB14_XENLA (DnaJ homolog subfamily B member 14 OS=Xenopus laevis GN=dnajb14 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 43/100 (43.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSG--------------ISTEAIIDPAAIFAMLFG 452
            YY+VLGVSP A E ++KKAY   A K HPDKN + P A + F+ +G AY VLS+P +R+ YD  G                    EA I P  +F M FG
Sbjct:  103 YYEVLGVSPDAGEEDLKKAYRKLALKFHPDKN-HAPGATEAFKKIGNAYAVLSNPEKRKQYDLTGSEDNVQNNHRNGGFDYHRGFEADITPEDLFNMFFG 201          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB12_HUMAN (DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST--------------EAIIDPAAIFAMLFG 452
            +YY++LGVS  AS+ ++KKAY   A K HPDKN + P A + F+ +G AY VLS+P +R+ YD +G                    EA I P  +F M FG
Sbjct:  110 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHGHGDFHRGFEADISPEDLFNMFFG 209          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 3
Query:  189 TEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIST-----EAIIDPAAIFAMLFGSELF 464
            T YY++LGV   AS  ++KKAY   A K HPDK   DP   + F+ L  AY+VLSDP +R+ YD YG+  +         + DP  IF   FG   F
Sbjct:   12 TRYYEILGVPKDASPEDLKKAYKKAAIKNHPDKG-GDP---EKFKELAHAYEVLSDPEKREIYDQYGEDALKEGMGGGGGMHDPFDIFQSFFGGSPF 104          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB3_MACFU (DnaJ homolog subfamily B member 3 OS=Macaca fuscata fuscata GN=DNAJB3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 41/104 (39.42%), Postives = 53/104 (50.96%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAII---------------DPAAIFAMLFGSE 458
            YY+VLGV       +IKKAY   A K HPDKNP N   A + F+ + EAY+VLSD  +R  YD YG++G      +               DPA +F   FG +
Sbjct:    4 YYEVLGVQVQRFPEDIKKAYRKLALKWHPDKNPDNKEEAERRFKQVAEAYEVLSDAKKRDVYDRYGEAGAEGSCAVGRPFEDPFEYIFSFRDPAEVFREFFGGQ 107          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_YERPY (Chaperone protein dnaJ OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  A E EIKKAY   A K HPD+   D  A + F+   EAY++L+D  +R AYD YG
Sbjct:    5 DYYEVLGVSRDAEEREIKKAYKRLAMKFHPDRQSEDKNAEEKFKEAKEAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_YERPS (Chaperone protein dnaJ OS=Yersinia pseudotuberculosis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  A E EIKKAY   A K HPD+   D  A + F+   EAY++L+D  +R AYD YG
Sbjct:    5 DYYEVLGVSRDAEEREIKKAYKRLAMKFHPDRQSEDKNAEEKFKEAKEAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_YERPP (Chaperone protein dnaJ OS=Yersinia pestis (strain Pestoides F) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  A E EIKKAY   A K HPD+   D  A + F+   EAY++L+D  +R AYD YG
Sbjct:    5 DYYEVLGVSRDAEEREIKKAYKRLAMKFHPDRQSEDKNAEEKFKEAKEAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_YERPN (Chaperone protein dnaJ OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  A E EIKKAY   A K HPD+   D  A + F+   EAY++L+D  +R AYD YG
Sbjct:    5 DYYEVLGVSRDAEEREIKKAYKRLAMKFHPDRQSEDKNAEEKFKEAKEAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_YERPG (Chaperone protein dnaJ OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  A E EIKKAY   A K HPD+   D  A + F+   EAY++L+D  +R AYD YG
Sbjct:    5 DYYEVLGVSRDAEEREIKKAYKRLAMKFHPDRQSEDKNAEEKFKEAKEAYEILTDAQKRAAYDQYG 70          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ3_ARATH1.068e-1139.45Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G... [more]
DJB14_XENLA1.068e-1143.00DnaJ homolog subfamily B member 14 OS=Xenopus laev... [more]
DJB12_HUMAN1.068e-1140.59DnaJ homolog subfamily B member 12 OS=Homo sapiens... [more]
DNJH_ATRNU1.395e-1142.27DnaJ protein homolog ANJ1 OS=Atriplex nummularia P... [more]
DNJB3_MACFU1.395e-1139.42DnaJ homolog subfamily B member 3 OS=Macaca fuscat... [more]
DNAJ_YERPY1.395e-1151.52Chaperone protein dnaJ OS=Yersinia pseudotuberculo... [more]
DNAJ_YERPS1.395e-1151.52Chaperone protein dnaJ OS=Yersinia pseudotuberculo... [more]
DNAJ_YERPP1.395e-1151.52Chaperone protein dnaJ OS=Yersinia pestis (strain ... [more]
DNAJ_YERPN1.395e-1151.52Chaperone protein dnaJ OS=Yersinia pestis bv. Anti... [more]
DNAJ_YERPG1.395e-1151.52Chaperone protein dnaJ OS=Yersinia pestis bv. Anti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
back to top