FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14138 contig Ccv1_Contig14138:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_YERPE (Chaperone protein dnaJ OS=Yersinia pestis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  A E EIKKAY   A K HPD+   D  A + F+   EAY++L+D  +R AYD YG
Sbjct:    5 DYYEVLGVSRDAEEREIKKAYKRLAMKFHPDRQSEDKNAEEKFKEAKEAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_YERPB (Chaperone protein dnaJ OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  A E EIKKAY   A K HPD+   D  A + F+   EAY++L+D  +R AYD YG
Sbjct:    5 DYYEVLGVSRDAEEREIKKAYKRLAMKFHPDRQSEDKNAEEKFKEAKEAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_YERPA (Chaperone protein dnaJ OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  A E EIKKAY   A K HPD+   D  A + F+   EAY++L+D  +R AYD YG
Sbjct:    5 DYYEVLGVSRDAEEREIKKAYKRLAMKFHPDRQSEDKNAEEKFKEAKEAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_YERP3 (Chaperone protein dnaJ OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY+VLGVS  A E EIKKAY   A K HPD+   D  A + F+   EAY++L+D  +R AYD YG
Sbjct:    5 DYYEVLGVSRDAEEREIKKAYKRLAMKFHPDRKSEDKNAEEKFKEAKEAYEILTDAQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_VIBSL (Chaperone protein dnaJ OS=Vibrio splendidus (strain LGP32) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + ++Y+VLGVS  ASE +IKKAY   A K HPD+N  D  AA  F+ +  AY++L+D  ++ AYD YG
Sbjct:    1 MSKRDFYEVLGVSRDASERDIKKAYKRLAMKFHPDRNQGDDSAADKFKEVKVAYEILTDAQKKAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_LEIXX (Chaperone protein dnaJ OS=Leifsonia xyli subsp. xyli GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIG 479
            ++Y+VLGV   A+  EIKKAY   AR++HPD NP+   A + F+++  AY VLSDP QRQ YD  G SG       D +      FG ++FE + G
Sbjct:    3 DHYEVLGVERNATPDEIKKAYRRLARELHPDVNPSTE-AQERFKLVTHAYDVLSDPQQRQQYDRGGASGFGGGGGADFSG-----FG-DIFETFFG 91          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_HAEIG (Chaperone protein dnaJ OS=Haemophilus influenzae (strain PittGG) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEDYIGQL 485
            +YY+VLG+   ASE +IK+AY   A K HPDKN     A + F+ + EAY+VL D  +R AYD YG +          A  F   FG   F D  G +
Sbjct:    5 DYYEVLGLKKGASENDIKRAYKRLASKHHPDKNQGSKEAEEKFKEINEAYEVLGDDQKRAAYDQYGHAAFEQGG---GAGGFGGGFGGADFGDMFGDI 99          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_ERWT9 (Chaperone protein dnaJ OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            +YY++LGV+ +A E EIKKAY   A K HPD+N  D  +   F+ + EAY++L+D  +R AYD YG
Sbjct:    5 DYYEILGVAKSADEREIKKAYKRLAMKFHPDRNQGDKESEGKFKEIKEAYEILTDGQKRAAYDQYG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_DELAS (Chaperone protein dnaJ OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPL--AAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAI----FAMLFGSELFEDYIGQ 482
            + + ++Y+VLGV+  AS+ +IKKAY   A K HPD+N  D    A + F+   EAY++LSD  +R AYD YG +G+     +   A     FA  FG ++F D   Q
Sbjct:    1 MSKRDFYEVLGVAKNASDDDIKKAYRKLAMKYHPDRNQGDAAREAEEKFKEAKEAYEMLSDSNKRAAYDQYGHAGVDPNRGMGGGAEGFGGFAEAFG-DIFGDMFNQ 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP4 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEA 413
            +YYD+LGVS  A + ++K+AY   ARK HPD N  +  A + F+ +  AY+VLSDP  R  YD +G++G+S  A
Sbjct:    4 DYYDILGVSRDAGQEDLKQAYRRLARKYHPDVN-KEAGAEERFKEINRAYEVLSDPETRARYDRFGEAGVSGAA 76          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_YERPE1.395e-1151.52Chaperone protein dnaJ OS=Yersinia pestis GN=dnaJ ... [more]
DNAJ_YERPB1.395e-1151.52Chaperone protein dnaJ OS=Yersinia pseudotuberculo... [more]
DNAJ_YERPA1.395e-1151.52Chaperone protein dnaJ OS=Yersinia pestis bv. Anti... [more]
DNAJ_YERP31.395e-1151.52Chaperone protein dnaJ OS=Yersinia pseudotuberculo... [more]
DNAJ_VIBSL1.395e-1147.14Chaperone protein dnaJ OS=Vibrio splendidus (strai... [more]
DNAJ_LEIXX1.395e-1143.75Chaperone protein dnaJ OS=Leifsonia xyli subsp. xy... [more]
DNAJ_HAEIG1.395e-1140.82Chaperone protein dnaJ OS=Haemophilus influenzae (... [more]
DNAJ_ERWT91.395e-1148.48Chaperone protein dnaJ OS=Erwinia tasmaniensis (st... [more]
DNAJ_DELAS1.395e-1139.25Chaperone protein dnaJ OS=Delftia acidovorans (str... [more]
DNAJ_CYAP41.395e-1145.95Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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